Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03353 ATGAGAATCAGATATCTTCATATCAAGCTCAAGGCATTTAAGTTGAAAAGGTTTCTGCTAAGATTTCTAAGCAGAAAGAGAAGGCTAATGCCAGCAAAAAAGCCTTCATGGATGACACCAGTAACACATGGTTATCAAGTGGTGGAACATCATATGATAAGAGATGGTTCTGATTACTCAGACATTGATTCAATTGTGGTACAAAGAGAGCAAATGGATCAAACTGAATTGTGGTATTTTGGAATATTTGATCCATTAGTTGGAGACAAAGTTACCAAGTACATGCAATCTCATTTCTTTACAAAGAAGCTACAGGAGGCTCAAATATGGAGAAAAAGCAAAGAAATGATGAAGAAAGCTTATCTTGGTGTAAGGTCAAAGATGAAAGAAGAACAAAGATATGAAGACACATGTAGAATGAGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTGTAATAGCTAATATAGGAAACTACAGAGTTGTTGTGTGTAAAGATGGAATGGCTCATCAGAAAGTTGACACATACCAACAATCGGGCAAAAGACACTGGTCTCGCAAAATATTTTCAGGAAATGCAGTAGCTACAAGGCATTCTAGCAGCTCAGAACTTGTCATCAGAAGTGAAAATATTGATTCTGATACTGAATTTTTGATACTAGCAAGTAGTGGTATATGGGAGGTGATGAAGAACCAAGAAGCTGTGAATCTAATAAGTCACATAGAAGATCCACAAGAAGCAGCTGAATGTTTGGCAAATGAAGCACTAAATAGAATGAGCAAAAGCAACATTTCATGCTTAATCATTCGTTTTGACTGA 825 0.3612 MRIRYLHIKLKAFKLKRFLLRFLSRKRRLMPAKKPSWMTPVTHGYQVVEHHMIRDGSDYSDIDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQSHFFTKKLQEAQIWRKSKEMMKKAYLGVRSKMKEEQRYEDTCRMSSASVMVINGEKLVIANIGNYRVVVCKDGMAHQKVDTYQQSGKRHWSRKIFSGNAVATRHSSSSELVIRSENIDSDTEFLILASSGIWEVMKNQEAVNLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03353 274 SMART PP2C_4 40 271 IPR001932 -
Trre1g03353 274 SUPERFAMILY PP2C-like 65 274 IPR036457 -
Trre1g03353 274 CDD PP2Cc 63 273 IPR001932 -
Trre1g03353 274 Gene3D - 59 274 IPR036457 -
Trre1g03353 274 PANTHER PROTEIN PHOSPHATASE 62 272 IPR015655 GO:0004722|GO:0006470
Trre1g03353 274 Pfam Protein phosphatase 2C 208 266 IPR001932 -
Trre1g03353 274 Pfam Protein phosphatase 2C 77 174 IPR001932 -
Trre1g03353 274 ProSiteProfiles PPM-type phosphatase domain profile. 59 273 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03353 Trre-Chr1 29739018 29741152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03353 6 273 PP2C-type Phosphatase Gene Family AT3G23360 50.183 3.45e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03353 K19704 - gmx:100785227 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03353 1 29739018 29741152 Trre1g03353 1 29739018 29741152 ECH