Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03352 ATGAGAATCAGATATCTTCATATCAAGCTCAAGGCATTTAAGTTGAAAAGGTTTCTGCTAAGATTTCTAAGCAGAAAGAGAAGGCTAATGCCAGCAAAAAAGCCTTCATGGATGACACCAGTAACACATGGTTATCAAGTGGTGGAACATCATATGATAAGAGATGGTTCTGATTACTCAGACATTGATTCAATTGTGGTACAAAGAGAGCAAATGGATCAAACTGAATTGTGGTATTTTGGAATATTTGATCCATTAGTTGGAGACAAAGTTACCAAGTACATGCAATCTCATTTCTTTACAAAGAAGCTACAGGAGGCTCAAATATGGAGAAAAAGCAAAGAAATGATGAAGAAAGCTTATCTTGGTGTAAGGTCAAAGATGAAAGAAGAACAAAGATATGAAGACACATGTAGAATGAGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTGTAATAGCTAATATAGGAAACTACAGAGTTGTTGTGTGTAAAGATGGAATGGCTCATCAGAAAGTTGACACATACCAACAATCGGGCAAAAGACACTGGTCTCGCAAAATATTTTCAGCATATGAATCAGGAAATGCAGTAGCTACAAGGCATTCTAGCAGCTCAGAACTTGTCATCAGAAGTGAAAATATTGATTCTGATACTGAATTTTTGATACTAGCAAGTAGTGGTATATGGGAGGTGATGAAGAACCAAGAAGCTGTGAATCTAATAAGTCACATAGAAGATCCACAAGAAGCAGCTGAATGTTTGGCAAATGAAGCACTAAATAGAATGAGCAAAAGCAACATTTCATGCTTAATCATTCGTTTTGACTGA 837 0.3608 MRIRYLHIKLKAFKLKRFLLRFLSRKRRLMPAKKPSWMTPVTHGYQVVEHHMIRDGSDYSDIDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQSHFFTKKLQEAQIWRKSKEMMKKAYLGVRSKMKEEQRYEDTCRMSSASVMVINGEKLVIANIGNYRVVVCKDGMAHQKVDTYQQSGKRHWSRKIFSAYESGNAVATRHSSSSELVIRSENIDSDTEFLILASSGIWEVMKNQEAVNLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03352 278 CDD PP2Cc 63 277 IPR001932 -
Trre1g03352 278 ProSiteProfiles PPM-type phosphatase domain profile. 59 277 IPR001932 -
Trre1g03352 278 SMART PP2C_4 40 275 IPR001932 -
Trre1g03352 278 Gene3D - 56 278 IPR036457 -
Trre1g03352 278 SUPERFAMILY PP2C-like 65 278 IPR036457 -
Trre1g03352 278 PANTHER PROTEIN PHOSPHATASE 62 276 IPR015655 GO:0004722|GO:0006470
Trre1g03352 278 Pfam Protein phosphatase 2C 211 270 IPR001932 -
Trre1g03352 278 Pfam Protein phosphatase 2C 77 174 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03352 Trre-Chr1 29739018 29741152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03352 6 277 PP2C-type Phosphatase Gene Family AT3G23360 50.183 3.93e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03352 K19704 - gmx:100785227 378.637