Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03351 ATGCCGTTCAAGAGGTTCGTTGAGATCGGGAGAGTTGCACTTGTCAACTACGGCGAGGCTTATGGAAAGCTCGTTGTCATCGTTGATGTCATTGACCAAACTAGGGCTCTTGTTGATGCACCTGATATGGAGAGAGTTCCAATTAATTTCAAGAGGCTTTCTTTAACTGATATCAAGATTGATATCAAAAGAGTCCCTAAGAAGAAGGATCTCATCAAGGCCATGGAAGAAGCTGATGTGAAGAATAAGTGGGAGAAGAGTTCATGGGGAAGGAAATTGATTGTTAGGAAGAGGAGAGCAGCACTTAATGATTTTGATAGGTTCAAGATTATGTTGGCAAAGATTAAGAGGGCTGCTGTTGTTAGGCAAGAACTTGCTAAGCTGAAGAAGACTGCAGCTTAG 402 0.4229 MPFKRFVEIGRVALVNYGEAYGKLVVIVDVIDQTRALVDAPDMERVPINFKRLSLTDIKIDIKRVPKKKDLIKAMEEADVKNKWEKSSWGRKLIVRKRRAALNDFDRFKIMLAKIKRAAVVRQELAKLKKTAA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03351 133 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Trre1g03351 133 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Trre1g03351 133 Gene3D - 1 84 IPR014722 -
Trre1g03351 133 PANTHER 60S RIBOSOMAL PROTEIN L14 1 131 IPR039660 GO:0003723|GO:0003735
Trre1g03351 133 FunFam 60S ribosomal protein L14-1 1 84 - -
Trre1g03351 133 CDD KOW_RPL14 7 79 IPR041985 -
Trre1g03351 133 Gene3D - 92 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03351 Trre-Chr1 29733909 29735400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03351 1 133 Cytoplasmic Ribosomal Protein Gene Family AT2G20450 85.714 8.06e-78 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03351 K02875 - gmx:100499889 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03351 1 29733909 29735400 Trre1g03351 1 29733909 29735400 ECH