Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03337 ATGGAGAAAATTGGAGTAGTATTATCGGCGAAAGAGGCATTTGAGAAGCTTGAGAAAGTTGGAGAAGGAACGTATGGGAAGGTTTATAGAGCAAGAGAGAAAGCTACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTTCATGAGGATGATGAAGGTGTTCCTCCTAACACTCTTCGTGAGGTTTCCATTTTGCGAATGCTCTCTCGCGATCCACATGTTGTTAGGTTATTGGATGTGAAACAAGGTCAGAACAAGGAAGGAAAAACTGTGCTGTACTTGGTTTTTGAGTACATGGATACTGATCTCAAGAAATTCATTCGTACTTTTCGTCAAACTGGACAAAACATTCCACCCCCAGTCGTCAAAGGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTTTGCCATGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAATGATGCTCAAAATTGCTGATCTTGGACTTGCTAGAGCATTTACTGTGCCACTTAAGAAGTACACTCATGAGATACTGACCCTGTGGTATAGAGCTCCTGAAGTCCTTTTGGGGGCTACCCATTACTCGATGGCTGTCGATATGTGGTCTGTTGCCTGCATATTCGCTGAACTTGTTACCAAGCAAGCACTATTTCCTGGTGATTCTGAGCTGCAACAACTCCTCCACATATTCAGGCTGTTGGGGACTCCTAATGAAGAGATGTGGCCAGGTGTTAGTAAACTAATGAACTGGCATGAGTATCCTCAGTGGAGCCCTCAAAGTCTTTCAAAGGCTGTTCCCACTTTGGAAGAGGCTGGACTGGATCTACTCTCTCAAATGCTGCAATATGAACCTGCCAAGCGGATTTCAGCAAAGAAAGCAATGGAACATCCTTACTTTGATGACCTTGACAAGACCAATCTTTAG 939 0.4441 MEKIGVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPNTLREVSILRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRTFRQTGQNIPPPVVKGLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPLKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEMWPGVSKLMNWHEYPQWSPQSLSKAVPTLEEAGLDLLSQMLQYEPAKRISAKKAMEHPYFDDLDKTNL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03337 312 SUPERFAMILY Protein kinase-like (PK-like) 11 307 IPR011009 -
Trre1g03337 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03337 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Trre1g03337 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre1g03337 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Trre1g03337 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Trre1g03337 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03337 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Trre1g03337 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Trre1g03337 312 PANTHER CELL DIVISION PROTEIN KINASE 12 305 - -
Trre1g03337 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03337 Trre-Chr1 29617134 29618885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03337 1 312 Core Cell Cycle Gene Families AT1G20930 85.079 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre1g03337 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03337 K07760 - gmx:100808302 585.104