Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03331 ATGGAGAGAAGAGAAAAATATTATACTCTAGCACTTTGTTACTGCGGCGAAGGTGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAATTCAGTATACTCAGATTGCATAGAGGAATTACTTTTAGCATCGAAAATTTGTGCGGACAATAAGGTTTTTGTTGAAGACGGAATCAAATTTTCAAGCAAGGCTATTTCACAGATGTATGGAAAATGCAATCAAATTGAAGCTGTTGCAAATTGTTTACTAGGTGTTCTACTGTCGACAAAATCAAAATCAGTTTCTTCTGAATCAGAGAAAGTTTTGATGCAATCTCAAGCATTCAGTGCTTTAAAAGCCGCAGAGAGAATGATGACGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTGGAATATGCTGAACATAGGAATTTGAGAATTGCTTATAAGCATGCAAAGAAATTGGTTAAGTTGGAAGGTGGGTCTAGTATTAGTGGATATATACTACTAGCGCGGATTTTATCGGCTCAAAAAGAGTTTGATGATGCCGAAATTGTTATTGATGCTGCTTTAGATCAAAGTGGAAGATGGGATCAAGTAGAATTGTTGAGAACTAAAGCTAAGATTCAGATTGCACAGGGAAGATTGAAAAATGCTATTCAGACATACACATTTTTTCTCGCTGTTCTTCAAGTCCAAAATAAAAGCCTAGGCACTGCAAACAAGATTGTGAAGTATAAAAGAAATCGCGACAGAAGACTTGAAATGGAAGTGTGGCATGATCTAGCCAATGTGTACACAGCTTTATCACAGTGGAGTGATGCTGAAGTTTGTCTTGCTAAGTCTCAAGCTATTGATCCATATTCTGCTTCTAGATGGCATTCTACAGGTTTACTTTATGAAGCAAGAGGTCTTCATCAAGAAGCATTGAAATCATTTAGAAAAGCATTAGATATTGAGCCAAACCATGTGGAAAGTTTAATATCAACAGCTTGTGTTATGAGAAAACTTGGTTGTGAATCATCATCTTCAATTGTTAGAAGCCTTCTCACTGAAGCATTAAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGGACATCAGCATTGGAAGCTGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 1209 0.3664 MERREKYYTLALCYCGEGEHIVALDLLRNFLNNRENSVYSDCIEELLLASKICADNKVFVEDGIKFSSKAISQMYGKCNQIEAVANCLLGVLLSTKSKSVSSESEKVLMQSQAFSALKAAERMMTENDPYIVLNLCLEYAEHRNLRIAYKHAKKLVKLEGGSSISGYILLARILSAQKEFDDAEIVIDAALDQSGRWDQVELLRTKAKIQIAQGRLKNAIQTYTFFLAVLQVQNKSLGTANKIVKYKRNRDRRLEMEVWHDLANVYTALSQWSDAEVCLAKSQAIDPYSASRWHSTGLLYEARGLHQEALKSFRKALDIEPNHVESLISTACVMRKLGCESSSSIVRSLLTEALRLDRTNSSAWYNLGLLYKADLGTSALEAAECFEAAVFLEESSPIEPFR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03331 402 Gene3D Tetratricopeptide repeat domain 2 233 IPR011990 GO:0005515
Trre1g03331 402 SMART tpr_5 164 197 IPR019734 GO:0005515
Trre1g03331 402 SMART tpr_5 256 289 IPR019734 GO:0005515
Trre1g03331 402 SMART tpr_5 290 323 IPR019734 GO:0005515
Trre1g03331 402 PANTHER PROTEIN NPG1 1 402 IPR043376 -
Trre1g03331 402 Gene3D Tetratricopeptide repeat domain 234 398 IPR011990 GO:0005515
Trre1g03331 402 SUPERFAMILY TPR-like 5 223 IPR011990 GO:0005515
Trre1g03331 402 Pfam Tetratricopeptide repeat 292 323 IPR019734 GO:0005515
Trre1g03331 402 SUPERFAMILY TPR-like 198 372 IPR011990 GO:0005515
Trre1g03331 402 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Trre1g03331 402 ProSiteProfiles TPR repeat region circular profile. 290 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03331 Trre-Chr1 29554414 29556451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03331 1 402 Calmodulin-binding Proteins AT4G28600 46.324 1.22e-113 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03331 K21843 - gmx:100789469 616.305