Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03322 ATGAATTCAAGTGAAGAAGGTGGTGATGATGATAATCAAGGAAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGCTTCACAAATGCTCAAGCATTAGGTGGTCACATGAATATTCATAGGAAAGATAGATCAAAGGCTTCTAAGCAATTAAATTTTTCTTCTTCATCACAAATTGCAAACAAATTCTTCACTAATAATGAAGATGTGGCTTTTCCTTATGCTAATTCAGAACAACCTATGAGTCAAAACTATGATGGCATGTATTTTCAACATCAATATTTTCCACCAAATAATTACCTTGTTGGAAATAATTACCAACCTTCAAATGTGCATGGTTTTGGATATGAATATCCAAGACCATCAAATTGGTCAAATTTGCATTTGAATCAAGAGCTTCAAGGTCCTAATTTGAGTCTTCAAATTGGTTCAAGTCAGCATTATGTGGATAACACTCATCATCAAAGAATTAGGAGAGGAAATGATGAGGAAGAAAATGAAGTGGATTTGGAGCTCAGATTAGGCCATGATCCATGA 540 0.3389 MNSSEEGGDDDNQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRSKASKQLNFSSSSQIANKFFTNNEDVAFPYANSEQPMSQNYDGMYFQHQYFPPNNYLVGNNYQPSNVHGFGYEYPRPSNWSNLHLNQELQGPNLSLQIGSSQHYVDNTHHQRIRRGNDEEENEVDLELRLGHDP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03322 179 Pfam C2H2-type zinc finger 19 43 - -
Trre1g03322 179 Gene3D Classic Zinc Finger 8 73 - -
Trre1g03322 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Trre1g03322 179 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Trre1g03322 179 PANTHER OS07G0101800 PROTEIN 15 178 - -
Trre1g03322 179 SMART c2h2final6 19 41 IPR013087 -
Trre1g03322 179 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03322 Trre-Chr1 29451944 29452483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03322 8 52 C2H2 Transcription Factor Family AT3G09290 64.444 1.11e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g03322 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03322 - - psat:127093235 215.312