Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03278 ATGACGTTAACAAAACCCGTTTCTCACATTCTTTCACTCTCTCCGTGCTTCAACCCTAGCGAAAATGCCTTTCAAGAGATTCGTAGACTCGTTGTTATCGTTGATGTCATCGACCAAACCAGAGCTCTCGTTGATGCTCCTGATATGGAGAGGGTTCCTATAAATTTCAAGAGGCTCTCACTCACTGACATCAAGATTGAGATTAAGAGAGTCCCCAAGAAGAAGGATCTCATCAAAGCCATGGAAGCTGCAGATGTTAAGAACAAGTGGGAGAAGAGTTCTTGGGGCAGGAAACTGATTGTGAGGAAGAGAAGGGCTGCCCTCAATGACTTTGACAGGTTCAAGATCATGTTGGCAAAGATCAAGAGGGCAGCTGTTGTAAGGCAAGAACTTGCTAAGTTGAAGAAGACTGAAGCTTAG 420 0.4452 MTLTKPVSHILSLSPCFNPSENAFQEIRRLVVIVDVIDQTRALVDAPDMERVPINFKRLSLTDIKIEIKRVPKKKDLIKAMEAADVKNKWEKSSWGRKLIVRKRRAALNDFDRFKIMLAKIKRAAVVRQELAKLKKTEA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03278 139 Gene3D - 22 92 IPR014722 -
Trre1g03278 139 Pfam Ribosomal protein L14 51 123 IPR002784 GO:0003735|GO:0005840|GO:0006412
Trre1g03278 139 SUPERFAMILY Translation proteins SH3-like domain 29 99 IPR008991 -
Trre1g03278 139 Coils Coil 127 139 - -
Trre1g03278 139 Gene3D - 98 133 - -
Trre1g03278 139 PANTHER 60S RIBOSOMAL PROTEIN L14 26 137 IPR039660 GO:0003723|GO:0003735
Trre1g03278 139 CDD KOW_RPL14 29 85 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03278 Trre-Chr1 28966367 28967678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03278 22 136 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 80.870 3.93e-61 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03278 K02875 - gmx:100499889 193.356