Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03253 ATGGCAGGACAACTAGGAGTGCTTAATGCACTCGATGTGGCGAAAACACAAATGTACCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTTTTCACTGATGCTTATGATCTCTTCTGCATTTCCCTTGTCACAAAATTGTTAGGAAGAATCTATTACACAGATTACACTAAACCAAAGCCAGGTGTTCTTCCTCCGGGTGTACAAGCCGCTGTAACCGGTGTCGCGCTAGTTGGCACTTTAACAGGCCAACTGTTTTTCGGTTGGCTTGGTGACAAATTAGGAAGAAAAAAAGTTTACGGTATAACCCTTATGCTTATGGTTTTGGCTTGGTTTTGGTATTGGTGGTGA 351 0.4245 MAGQLGVLNALDVAKTQMYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYTKPKPGVLPPGVQAAVTGVALVGTLTGQLFFGWLGDKLGRKKVYGITLMLMVLAWFWYWW 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03253 116 SUPERFAMILY MFS general substrate transporter 11 115 IPR036259 -
Trre1g03253 116 Gene3D MFS general substrate transporter like domains 19 115 IPR036259 -
Trre1g03253 116 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 116 IPR020846 GO:0022857
Trre1g03253 116 Pfam Sugar (and other) transporter 24 110 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre1g03253 116 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03253 Trre-Chr1 28674581 28675008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03253 4 109 Inorganic Solute Cotransporters AT5G43360 83.019 8.23e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03253 K08176 - gmx:100792177 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03253 1 28674581 28675008 Trre1g03253 1 28674581 28675008 ECH