Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03233 ATGGATTCAAGTCCAACCTCAATTCCTAACTCTTCCACTTCAGATTTCTCCTCAGAATCCACTTCCTTCGAATTCGATTATCTTCCGTTCAACGAGAACGATCCTGAAGAGATGCTTCTCTACGGGATGATCAATGATGCAAACAACAACACCATCAACAACACTAGGGTTAAGGAAGAAGAAGTAAGTTCCGAAGAGAACGAACCGAGGAAGGAGAAGTCATACCGAGGTGTTAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATAAGGGATTCAACTAGAAATGGAATGAGAGTATGGTTAGGAACATTTGATAGTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCTGCTTTTTCCATGAGAGGTTCTGCTGCAATACTCAATTTTCCTGTTGAGATTGTGAGAGAATCGCTTAGTGAAATGAAAATGAATTGTGGTGATGGTTCTGAAGATGGGTGTTCACCTGTTGTTGCTTTAAAGAGGAAACATTCTTTGAGAAGAAAAATTGGTTTCAAGAAGAACAAAGAAAAAGATTATGGGAACAATAATAATAGTGTTGTTTTTGAAGATCTTGGTTCTGATTATTTGGAACAATTGTTGATGTCTTCTGATCAATTTCCTTGTCCTCAGTGA 639 0.3897 MDSSPTSIPNSSTSDFSSESTSFEFDYLPFNENDPEEMLLYGMINDANNNTINNTRVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEEAALAYDQAAFSMRGSAAILNFPVEIVRESLSEMKMNCGDGSEDGCSPVVALKRKHSLRRKIGFKKNKEKDYGNNNNSVVFEDLGSDYLEQLLMSSDQFPCPQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03233 212 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g03233 212 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Trre1g03233 212 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Trre1g03233 212 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Trre1g03233 212 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Trre1g03233 212 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Trre1g03233 212 MobiDBLite consensus disorder prediction 58 75 - -
Trre1g03233 212 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Trre1g03233 212 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Trre1g03233 212 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Trre1g03233 212 PANTHER DNA-BINDING DOMAIN 36 203 IPR044808 GO:0003700|GO:0009873
Trre1g03233 212 MobiDBLite consensus disorder prediction 56 76 - -
Trre1g03233 212 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03233 Trre-Chr1 28403738 28404376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03233 28 206 AP2-EREBP Transcription Factor Family AT3G23240 63.934 2.97e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g03233 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03233 K14516 - gmx:100790598 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02851 1 23710417 23711067 Trre1g03233 1 28403738 28404376 ECH
Trre1g03233 1 28403738 28404376 Trre1g03233 1 28403738 28404376 ECH