Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03232 ATGGAGGATCACCAAAGGGGAAAGCAAGGAAAGGAGGAGAAGGCCGGAAAGGACGAGGTTCGGTTCCGAGGCGTGAGGAGGAGGCCGTGGGGGAAGTATGCGGCGGAGATTAGGGATCCATCAAAGCAAGGTACAAGGCTATGGTTAGGGACATTTGATACGGCTGAAGAAGCAGCAAGAGCTTATGATAGAGCAGCATTTAATTTGAGGGGTCATCTTGCAATTTTGAATTTTCCTAGTGAGTATTATTCTAAAATTAGAGGGTCACCACCATATCCACCTCATTTAGCACCCCCATCATACACCTCATCATCATCTCATCATGCTAGTGGTAGCTCTTCTGGGCCTCAACAAAGGCCCATCTTTGAGTTTGAGTGTTTGGATGATAAGATATTGGAGGAACTTCTTGGGTCAGAGGAAGTGAGGAAAAAAAAGTAA 438 0.4612 MEDHQRGKQGKEEKAGKDEVRFRGVRRRPWGKYAAEIRDPSKQGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLAPPSYTSSSSHHASGSSSGPQQRPIFEFECLDDKILEELLGSEEVRKKK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03232 145 MobiDBLite consensus disorder prediction 87 119 - -
Trre1g03232 145 FunFam Ethylene-responsive transcription factor 2 20 81 - -
Trre1g03232 145 MobiDBLite consensus disorder prediction 99 119 - -
Trre1g03232 145 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Trre1g03232 145 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g03232 145 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Trre1g03232 145 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Trre1g03232 145 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Trre1g03232 145 PANTHER DNA-BINDING DOMAIN 10 131 IPR044808 GO:0003700|GO:0009873
Trre1g03232 145 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Trre1g03232 145 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trre1g03232 145 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Trre1g03232 145 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03232 Trre-Chr1 28340204 28340641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03232 19 143 AP2-EREBP Transcription Factor Family AT3G23230 65.600 4.12e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g03232 AP2 8e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03232 - - gmx:100793703 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03232 1 28340204 28340641 Trre1g03232 1 28340204 28340641 ECH