Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03230 ATGGCTGACTTCCAAGGTGGTAATGGTAGTTTGGGAACTAGGCGTAGTACAGTGCGATGTGGGGCTTGCAAGTTATTGAAGAGGAAGTGTACTAGTGAGTGCATCTTTGCACCCTACTTTGGTACAAACCAATGTGAATATAGCTTTGCGGTTGTGCACAAGGTGTTTGGTGCTAGCAATATCTCGAAGATCTTGTCCAGTGTTCCAACTAACCACCACCACGAAGCAGTGGCGACTATATCCTATGAGACTCAGGCTAGGCTATCTGATCCGATTTATGGTTGTGTCCACCATTCTTGCCTTGCAACAACAGGTGGTTGCAATGCAAGCAGAAGTCTCAATGATGCAATCTCAGCTGATGAATCGGAGATATGCATATGCAAGTGCTCTTCAAACCACACACCAGCAGCAGCATCAAATACTACAGCAACCAAACTTCAACTGGAGACGGCACCTTCTTCGCACAACTCAGAGCCTTTTCAAAACTCCAGGATGTCTCACTATGAGGAAGATGATTAA 519 0.4566 MADFQGGNGSLGTRRSTVRCGACKLLKRKCTSECIFAPYFGTNQCEYSFAVVHKVFGASNISKILSSVPTNHHHEAVATISYETQARLSDPIYGCVHHSCLATTGGCNASRSLNDAISADESEICICKCSSNHTPAAASNTTATKLQLETAPSSHNSEPFQNSRMSHYEEDD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03230 172 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 98 - -
Trre1g03230 172 Pfam Lateral organ boundaries (LOB) domain 19 103 IPR004883 -
Trre1g03230 172 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Trre1g03230 172 MobiDBLite consensus disorder prediction 140 163 - -
Trre1g03230 172 MobiDBLite consensus disorder prediction 140 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03230 Trre-Chr1 28320341 28321242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03230 20 96 AS2 family AT3G03760 68.831 2.78e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g03230 LOB 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03230 - - aprc:113866578 143.665