Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03228 ATGACTGACTTCCAAGGTGGTAATGGTAGTTCGGGAACTAGGCGTAGTACAGTGCGATGTGGGGCTTGCAAGTTATTGAAGAGGAAGTGCACTAGTGAGTGCATCTTTGCACCCTACTTTGGTGCTGACCAAGGTGAATCTAGCTTTGCGGTTGTCCACAAGGTGTTTGGTGCTAGCAATGTCTCGAAGATCTTGTCCAGTGTTCCAACTAACCACCGCCACGAAGCAGTGGCGACTATATCATATGAGGCTCAGGCTAGGCTATCCGATCCGGTTTATGGCTGTGTGTCTACCATTCTTGCCTTGCAGCAAGAGGTGGCAGCAATGCAAGCAGAGGTCTCAATGATGCAAACTGAGCTGATGAACAGAAGATTTGCAGGTGCAAATGCTCTTCAAACCACACACCAGGAGCAATATCAGATGCTACAGCAGCAAAACTTCAACATAGCAGTGCAGCCAGCATATTCCAACAATCCATATGCTTCCACCAACAACCACATGAACATGAACAACTTCAACCCGGGATTTGACCTCACAATGGAGATGGCCCCCTTATCACACAGCTTGGAGAGTTTTCAAAACTCTTGGTTCTCTCATTATGAGGAAGATGACTAA 615 0.4715 MTDFQGGNGSSGTRRSTVRCGACKLLKRKCTSECIFAPYFGADQGESSFAVVHKVFGASNVSKILSSVPTNHRHEAVATISYEAQARLSDPVYGCVSTILALQQEVAAMQAEVSMMQTELMNRRFAGANALQTTHQEQYQMLQQQNFNIAVQPAYSNNPYASTNNHMNMNNFNPGFDLTMEMAPLSHSLESFQNSWFSHYEEDD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03228 204 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Trre1g03228 204 Coils Coil 99 119 - -
Trre1g03228 204 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Trre1g03228 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03228 Trre-Chr1 28317263 28318033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03228 20 190 AS2 family AT3G03760 58.427 1.80e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g03228 LOB 6.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03228 - - aprc:113866578 241.121