Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03227 ATGGCTAAGTTCCAAGGTGGTAATGGTAGCTTGGGAACTAGGCGTAGTACACTGCAATGTGGGACTTGCAAATTATTGAAAAGGAAGTGTACTAGTGAATGCATCTTTGCACCCTACTTTGGTACAGACCAAGGTGAAGCTAGCTTTACGGTTGTGCACAACGTGTTTGGTGCTAGAAATGTGTCGAAGCTCTTGTCCAATGTTTCAACTAGCCACCGCCACGAAGCAGTGGCGACTATATCCTATAAGGCTCAGGCTAGGCTATTTGATCCGGTTTATGGTTATGTGTCAACCATTCTTTCTTCGCAGCAACAGGTTGAGTAA 324 0.4506 MAKFQGGNGSLGTRRSTLQCGTCKLLKRKCTSECIFAPYFGTDQGEASFTVVHNVFGARNVSKLLSNVSTSHRHEAVATISYKAQARLFDPVYGYVSTILSSQQQVE 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03227 107 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 106 - -
Trre1g03227 107 ProSiteProfiles LOB domain profile. 18 107 IPR004883 -
Trre1g03227 107 Pfam Lateral organ boundaries (LOB) domain 19 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03227 Trre-Chr1 28312977 28313300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03227 20 106 AS2 family AT3G03760 68.966 6.70e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g03227 LOB 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03227 - - tpra:123885950 135.191