Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03222 ATGAGTGAAGATGGATCAAGGGGAAGAACAAAGGACGATGGCGGACATGTCCGGTACCGAGGCGTTCGTTGCCGGCCGTGGGGGAAGTTTGCAGCCGAGATTCGCGACTCCAATAGGCAAGGTCAGAGAGTTTGGCTTGGAACTTTCAACACTGCTGAGGAAGCTGCTAGAGCATATGATAGAGCTGCTTACAATATGAGAGGTTCATTTGCAATCCTTAATTTTCCCAATGAATACAATATGCCAATCCGTCCTGGTTATAGTGCCACTTCTGCTTCATCTTCTTCTTCATCTTCTTCTTCAAGGAATACAAATGTGGAAGGCAGAGGAAAACAAGTGTTTGAGATTGAGTACTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGTGAAAAGAAATAAAGGACCCTAA 417 0.4412 MSEDGSRGRTKDDGGHVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYNMRGSFAILNFPNEYNMPIRPGYSATSASSSSSSSSSRNTNVEGRGKQVFEIEYLDDKLLEELLDFEVKRNKGP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03222 138 PANTHER DNA-BINDING DOMAIN 18 129 IPR044808 GO:0003700|GO:0009873
Trre1g03222 138 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Trre1g03222 138 MobiDBLite consensus disorder prediction 84 107 - -
Trre1g03222 138 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trre1g03222 138 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Trre1g03222 138 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03222 Trre-Chr1 28244107 28244523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03222 13 134 AP2-EREBP Transcription Factor Family AT3G23230 62.992 2.08e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g03222 AP2 6.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03222 - - gmx:100775830 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03222 1 28244107 28244523 Trre1g03222 1 28244107 28244523 ECH