Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03221 ATGGATCTTGTAAGTAGAAGATTCTTGATCCATTTTTCATCACATGTGACACAACCACAATCACAATCACAAGCTTTTTCACCAAGTTCAAATTCAATTTTTCATCCTCATATGCATCATTCTAGCACAAGTTTTCCTATTATTGCAATTGCTATAATAGGAATATTAGCAACAGCTTTCTTGCTTGTTTCCTACTACATCTTTGTGATCAAATGTTGTCTCAATTGGCACCGTATCGATCTTCTAAGACGATTCTCTCCGTCTAGAAGACGACAAGATCCGACAACAATATACTCACCAGGGACAGAACCTCGCGGTTTAGACGAAGCAGTGATTCGGTTAATCCCGGTTATTCAATTCAAAACAGAAGAAGAAGGGAACAATAGAGATTTCTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCATATTGATTGCATTGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGTATTTCATTGACAAACAGATTCAACTTTGATCAAATGCTTACACAAGGGCAATTTTCTACTCAAGATCAAAATCCAATTAGTGAAAATCTCATTAGTGGTGATGAAGATTTTGTTGTTATTGAATTAAGTAACAATAATGGTTTAGATTTACCATTACCAAGACCAAATTCATTGGAGCAAAGAAATGTTGAAAAGAAAGGAAAAAAGTTGAAAAAAGTTACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTTAGTTCAACCAATTAGAAGATCTTTTTCAATGGATTCATCAAGTGATAGACAATTCTATTTAGCAGTTCAAGAAGCTTTGCATCAACAAAAGAGGGAAATGAATGAAGTCAACAACACCATTGAAGGATGCAGTAGAGCTAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGACCCATGA 1023 0.3392 MDLVSRRFLIHFSSHVTQPQSQSQAFSPSSNSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIYSPGTEPRGLDEAVIRLIPVIQFKTEEEGNNRDFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTNRFNFDQMLTQGQFSTQDQNPISENLISGDEDFVVIELSNNNGLDLPLPRPNSLEQRNVEKKGKKLKKVTSMGDECIDIRATKDEQFLVQPIRRSFSMDSSSDRQFYLAVQEALHQQKREMNEVNNTIEGCSRAKKSFFSFGYGSRSRSSVQPVYLDP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03221 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 181 IPR013083 -
Trre1g03221 340 Coils Coil 289 316 - -
Trre1g03221 340 Pfam Ring finger domain 133 176 IPR001841 -
Trre1g03221 340 CDD RING-H2_EL5-like 133 176 - -
Trre1g03221 340 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Trre1g03221 340 PANTHER RING-H2 FINGER PROTEIN ATL16 29 336 IPR044600 GO:0016567|GO:0016740
Trre1g03221 340 SMART ring_2 134 175 IPR001841 -
Trre1g03221 340 FunFam E3 ubiquitin-protein ligase ATL6 97 182 - -
Trre1g03221 340 SUPERFAMILY RING/U-box 133 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03221 Trre-Chr1 28217767 28218789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03221 36 340 C3H Transcription Factor Family AT1G04360 49.157 1.04e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03221 - - gmx:100775286 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03221 1 28217767 28218789 Trre1g03221 1 28217767 28218789 ECH