Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03212 ATGGAGCAAAAAATATTTTCTTTTCTGCTTGCATTCAAAGAGTTCAAGCCACACCTGCTCATGATCTTAGCCCAAGTGGGCTATACCTTTGTATATTTCATCACTGAAGCTTCCTTCAACCATGGAATGAGTCCTTATGTTTATGTTACATATCGGCACGTCGTTGCCGGGGTTGTGATGTTCCCTTTTGCATACTTTCTAGAGAGAAAAGTAAGGCCAAAGCTGACATTTGCTCTTTTTATGGAAATTTTTTTGCTTTCAGTGTTGGGGATAACTTTGTCTCTCAATTTATACTTTGCAAGCTTAAAGTATACTTCTCCAACCTTTCTTGCTTCCATGTACAACACCGTATCATCCCTCACCTTCATTATTGCAGTGGCACTCAGGTTTGAGATTGTTGATATTAGAAATCCACGTGGCATAGCAAAAGTACTTGGGACAATAATCTCCTTAGCGGGTGTTATGACCATGACACTATACAAGGGACCTATGATGAGAAATTTGTGGCATCCTCTAATCCATATTCAACCAAAAAGTGCTTCTATCACTGAGGGAGGGTTAAGGGGTTCACTCCTTACCGTTTCAAGCTGTTTTACATTGTCTATGTGGTACATTATGCAGGCATCCACTTTGAAAAGATACCCCGCTCAATTATCACTCACTACATGGATGTGCTTTATTGGAGCAGCACAATCAGCTGTTTTTACAGTGATAATAGAACACAATAACCCTTCAGCATGGATTATAGGGATCAATATTGACTTGTGGTCCACAATATATGGGGGAATTGTTGTTGGTGGAATGTTGATGTACATTCAACTATGGGGCACTGAGAAAAAAGGGCCAGTTTTTGTCACAGTCTTTAACCCTCTTTGTACCATATTTGTGGCAATTTTAGCATACTTCGTCCTTGGTGAAAAGCTTTATTTGGGCAGCATCATAGGTGCATTTATTGTCATTATGGGTCTGTATTTGTTGCTGTGGGGTAAAGAAGGTGACAAAGAGGTTGATTTCAAGACCAAACAATCCACTAGTGATGACCAAGAATGCAGAGTGTAG 1059 0.3994 MEQKIFSFLLAFKEFKPHLLMILAQVGYTFVYFITEASFNHGMSPYVYVTYRHVVAGVVMFPFAYFLERKVRPKLTFALFMEIFLLSVLGITLSLNLYFASLKYTSPTFLASMYNTVSSLTFIIAVALRFEIVDIRNPRGIAKVLGTIISLAGVMTMTLYKGPMMRNLWHPLIHIQPKSASITEGGLRGSLLTVSSCFTLSMWYIMQASTLKRYPAQLSLTTWMCFIGAAQSAVFTVIIEHNNPSAWIIGINIDLWSTIYGGIVVGGMLMYIQLWGTEKKGPVFVTVFNPLCTIFVAILAYFVLGEKLYLGSIIGAFIVIMGLYLLLWGKEGDKEVDFKTKQSTSDDQECRV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03212 352 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Trre1g03212 352 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
Trre1g03212 352 PANTHER WAT1-RELATED PROTEIN 17 340 IPR030184 GO:0016020|GO:0022857
Trre1g03212 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Trre1g03212 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03212 Trre-Chr1 28164036 28167632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03212 16 351 Nodulin-like Gene Family AT5G07050 41.477 1.26e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03212 - - gmx:100527877 565.074