Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03180 ATGGTGCATCACTCTTGCTGCCACAAACAGAAGGTGAAAAGAGGACTATGGTCACCTGAGGAAGATGAAAAACTCATCAACTACATCACAAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCACAAGAAGTTGCTCTGATTGTTGAACTTCATACTATTCTAGGAAACAGGTGGGCTGAGATTGCAAAACATTTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAAAAGAAACTACTTTCACATGATCTTGTTCCTTCTTTAACCACATTTTCTATGGAAACTTTCTTCCCTTTATTTAATGACAATCCTACACTTAACAACTTAGATCATCATCTATACCTTCCTAACAGAATCTCATCTCCAATCCTACATGATCAAAATGATATCAAGAATATAATTGATATTAACAATTTCAATGCAAATTTCTTACATGTTCATCAAAATAATGCAATCTTGCCAGAAATTACAATACCATTATCCAATAATAATAATAATATTCTACCTTCTTTAGATCAATTAGATACATGGTCATTATTTCATCATCTCAATTCAAATACTCAAGAAAATCACCAAATCATTACCACAAAAAAACAAGTTACTACCCAAAATTTGAATATTGTTGACAATTTTATCAATCCAATTCCAAATAGTTGGCATCATTTGGTGGAACTTGAGCATATTGTGCCAAAAGTGTGTGAAACTATAACAGATGATTATGTTTGTAGCATTCCATTTTCTTTTACTGCTTCTTCACAAGAACATGTTGATGTTCATAATCAAGTTGTCAACCAAATTGATGAGTGTTATACAGATCAACAAAAGAGTATAATTTGTCCACAAGATCATCATCATCATAATCAAATTGTGGCTGCATCAAATATTGATTCTCTCATCATGTCATCATTGCCATCTTCAACATTCTATCAACCACCAGACAAGAATCTCACAAAACCAATCCATCCTTCAAGTAATTGA 1089 0.3315 MVHHSCCHKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEVALIVELHTILGNRWAEIAKHLPGRTDNEVKNFWNSSIKKKLLSHDLVPSLTTFSMETFFPLFNDNPTLNNLDHHLYLPNRISSPILHDQNDIKNIIDINNFNANFLHVHQNNAILPEITIPLSNNNNNILPSLDQLDTWSLFHHLNSNTQENHQIITTKKQVTTQNLNIVDNFINPIPNSWHHLVELEHIVPKVCETITDDYVCSIPFSFTASSQEHVDVHNQVVNQIDECYTDQQKSIICPQDHHHHNQIVAASNIDSLIMSSLPSSTFYQPPDKNLTKPIHPSSN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03180 362 SMART sant 66 114 IPR001005 -
Trre1g03180 362 SMART sant 13 63 IPR001005 -
Trre1g03180 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre1g03180 362 Gene3D - 11 67 - -
Trre1g03180 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre1g03180 362 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Trre1g03180 362 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre1g03180 362 FunFam Myb transcription factor 69 116 - -
Trre1g03180 362 FunFam Myb transcription factor 11 67 - -
Trre1g03180 362 CDD SANT 17 61 IPR001005 -
Trre1g03180 362 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Trre1g03180 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre1g03180 362 CDD SANT 69 109 IPR001005 -
Trre1g03180 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre1g03180 362 Gene3D - 69 116 - -
Trre1g03180 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03180 Trre-Chr1 27735325 27737941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03180 1 118 MYB Transcription Factor Family AT3G13890 91.525 1.21e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g03180 Myb_DNA-binding 9.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03180 K09422 - gmx:102662609 374.015