Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03175 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGAATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCAGTAATTATGGTGATGTTTTGAATACTTCAGTTATGAGAGAGAAGAACACTGGAAAACCTAGAGGCTTTGGTTTTGTTGTTTTTTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAACATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCGTTCTCAAGAGAAGATCAACAAATTTCTGTCAATTCGAGAACTGGAAACTCCAATTCTGGTATGAATTCGGGTAATGGTGGTAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTACCTCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAAGCTTATGGACTTGTAACTGATGTTGTAGTCATGTATGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTACATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTGCAAATAGCCGAATGGGTGGTGCTGGAGGTGGTAGTGCTGGAATGGGTGGTTATCAAGGGTACGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTTCGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCGTATGGATCATCTGCTTATAGTGCTGCTGCTGCTGGATATGGGTATGGTTCAGCTAGCAATGGCCTTGGTTATGGTGCATATGGAAGTTATGGTGCTGCTGCTGCTGGTTATGGTGGACCTGCTGCTGCAACATATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGCCTATGGCTCTATGGGTTATGGTAACACTGCTCCTTGGGGTGCTCCAAGTGGGGGTGCTGGATCTGGTTCAGCAACTGCTGGTCAATCTCCTAGTGCAGCTGCTGGATATGGGAATCAAGGTTATGGGTATGGTGGTTATGGCAGCGGGTATGGTGGAAGTGATAATTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGCGGGCGTACTGGGAGCGCTCCAAATAGTAATGCTAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGCGGCTATGGGGATGCAAATGGAAATTCTGGTTATGGAAATGCAGCATGGAGATCTGAACAGGCTCAAGCATCCGGTAATTATGGGACTCCTCAGGGAAATGGTGGCCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1413 0.4685 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVNSRTGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMGGAGGGSAGMGGYQGYGASGGNQNAYDGRSDSSRYMQPQSAAGGFPPYGSSAYSAAAAGYGYGSASNGLGYGAYGSYGAAAAGYGGPAAATYGNPNVPNAAYAAGGPRSSWPAQAPSAYGSMGYGNTAPWGAPSGGAGSGSATAGQSPSAAAGYGNQGYGYGGYGSGYGGSDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03175 470 CDD RRM2_Hrp1p 113 190 - -
Trre1g03175 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Trre1g03175 470 MobiDBLite consensus disorder prediction 391 449 - -
Trre1g03175 470 SMART rrm1_1 113 185 IPR000504 GO:0003723
Trre1g03175 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre1g03175 470 MobiDBLite consensus disorder prediction 83 108 - -
Trre1g03175 470 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Trre1g03175 470 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Trre1g03175 470 FunFam heterogeneous nuclear ribonucleoprotein 1 107 229 - -
Trre1g03175 470 SUPERFAMILY RNA-binding domain, RBD 111 220 IPR035979 GO:0003676
Trre1g03175 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 470 - -
Trre1g03175 470 MobiDBLite consensus disorder prediction 391 470 - -
Trre1g03175 470 MobiDBLite consensus disorder prediction 84 108 - -
Trre1g03175 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 95 IPR000504 GO:0003723
Trre1g03175 470 Gene3D - 1 92 IPR012677 -
Trre1g03175 470 Gene3D - 108 229 IPR012677 -
Trre1g03175 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Trre1g03175 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Trre1g03175 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03175 Trre-Chr1 27648333 27651351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03175 8 217 Eukaryotic Initiation Factors Gene Family AT2G23350 28.692 5.66e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03175 K14411 - gmx:100811267 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03175 1 27648333 27651351 Trre1g03175 1 27648333 27651351 ECH