Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03164 ATGTTATTTACATTTCCTTTATATCACTTCTCACAGGATGAAATTTCAAGCCCTCTCAGCGCTCGAATTTTCGAGCTTTGTAACCCTGAATTATTTCCAGAAGCTTTGCAGAATTCTGAAGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCATCATATCCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAACAATAATACAGTAGTGACAACTCCAACTAGCACCAACACCAACAACAATAATAACAACAATTCAAACAATAGCAATAATCTTTCTGTTATCTTTGATTCACAAGAAGAAATTGACAATGACATTTCTGCTTCAATAGATTTCTCACTCTCACCATCATTCAATGTTCCTTCATTCTTACCAGTCACATCATCACAGCAAGAACAATTTGATTTCAATTCTCATGTTCAACAACTAACATCATGTTCATCTGTTGAAGCGTTCTCACAGTTTCATAATCCAAATGATTCAGTTGCACCTCTTTTGGGAACTTCATTATCATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTACCTTCTTATCTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTAATCCGGCTGGAATCGCGTCATATATGCCGCCTCCTCCTGGTTCTCTTGCTACTGCTTTGTCTGCTGATAGTGCTGCTTTGTTTGGTGGAAATATGCTTCTTGGTTCTGAACTTCAGACTCAAGAACTTGATTATCAAGGAGATAATGGTAGAATGTATTGTCCTGATCCTATTCAGAGGGTGTTTAACCCTCCTGATCTTCAGGCACTTAATACTGAGAATCAACAACTAGTAACTGGTTCTGGTAGTTCTGCCACTTTGACACCAGAAATCTCAAACTTGGAGGACTCAACTTTTAAGGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATTCATAGATATATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGCTGTGAAAGAGGAATATGATATGGTTGATTCCTCAGATATATTTGCTCATATAAGTGGAGTGAATTCCTTCAAATGCAACTATTCCATCCAATCATGGATTTGA 1245 0.3639 MLFTFPLYHFSQDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYPTNILDVETKFNNSNSNNNTVVTTPTSTNTNNNNNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQEQFDFNSHVQQLTSCSSVEAFSQFHNPNDSVAPLLGTSLSLPPVFEEDCITSVPSYLPLNPSSPSCNYLNPAGIASYMPPPPGSLATALSADSAALFGGNMLLGSELQTQELDYQGDNGRMYCPDPIQRVFNPPDLQALNTENQQLVTGSGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEYDMVDSSDIFAHISGVNSFKCNYSIQSWI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03164 414 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 99 389 IPR045281 GO:0009909
Trre1g03164 414 MobiDBLite consensus disorder prediction 67 98 - -
Trre1g03164 414 Pfam CCT motif 316 358 IPR010402 GO:0005515
Trre1g03164 414 MobiDBLite consensus disorder prediction 351 373 - -
Trre1g03164 414 MobiDBLite consensus disorder prediction 351 380 - -
Trre1g03164 414 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03164 Trre-Chr1 27546857 27549757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03164 296 360 C2C2-CO-like Transcription Factor Family AT5G24930 41.538 4.99e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g03164 CCT 5.4e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03164 - - aprc:113871720 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03164 1 27546857 27549757 Trre1g03164 1 27546857 27549757 ECH