Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03163 ATGTTGCATGACGTTTTTGATCAGCCACTGCCATCAAATTCAAAGGCAGAGCAGCAGCAACAACAACATCATCAACAACAACAACAACTTTCCATTGATGAAATTTCAAGCCCTCTCAGCGCTCGAATTTTCGAGCTTTGTAACCCTGAATTATTTCCAGAAGCTTTGCAGAATTCTGAAGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCATCATATCCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAACAATAATACAGTAGTGACAACTCCAACTAGCACCAACACCAACAACAATAATAACAACAATTCAAACAATAGCAATAATCTTTCTGTTATCTTTGATTCACAAGAAGAAATTGACAATGACATTTCTGCTTCAATAGATTTCTCACTCTCACCATCATTCAATGTTCCTTCATTCTTACCAGTCACATCATCACAGCAAGAACAATTTGATTTCAATTCTCATGTTCAACAACTAACATCATGTTCATCTGTTGAAGCGTTCTCACAGTTTCATAATCCAAATGATTCAGTTGCACCTCTTTTGGGAACTTCATTATCATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTACCTTCTTATCTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTAATCCGGCTGGAATCGCGTCATATATGCCGCCTCCTCCTGGTTCTCTTGCTACTGCTTTGTCTGCTGATAGTGCTGCTTTGTTTGGTGGAAATATGCTTCTTGGTTCTGAACTTCAGACTCAAGAACTTGATTATCAAGGAGATAATGGTAGAATGTATTGTCCTGATCCTATTCAGAGGGTGTTTAACCCTCCTGATCTTCAGGCACTTAATACTGAGAATCAACAACTAGTAACTGGTTCTGGTAGTTCTGCCACTTTGACACCAGAAATCTCAAACTTGGAGGACTCAACTTTTAAGGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATTCATAGATATATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGCTGTGAAAGAGGAATATGATATGGTTGATTCCTCAGATATATTTGCTCATATAAGTGGAGTGAATTCCTTCAAATGCAACTATTCCATCCAATCATGGATTTGA 1305 0.3693 MLHDVFDQPLPSNSKAEQQQQQHHQQQQQLSIDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYPTNILDVETKFNNSNSNNNTVVTTPTSTNTNNNNNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQEQFDFNSHVQQLTSCSSVEAFSQFHNPNDSVAPLLGTSLSLPPVFEEDCITSVPSYLPLNPSSPSCNYLNPAGIASYMPPPPGSLATALSADSAALFGGNMLLGSELQTQELDYQGDNGRMYCPDPIQRVFNPPDLQALNTENQQLVTGSGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEYDMVDSSDIFAHISGVNSFKCNYSIQSWI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03163 434 MobiDBLite consensus disorder prediction 87 118 - -
Trre1g03163 434 MobiDBLite consensus disorder prediction 11 30 - -
Trre1g03163 434 Pfam CCT motif 336 378 IPR010402 GO:0005515
Trre1g03163 434 MobiDBLite consensus disorder prediction 371 393 - -
Trre1g03163 434 ProSiteProfiles CCT domain profile. 336 378 IPR010402 GO:0005515
Trre1g03163 434 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g03163 434 MobiDBLite consensus disorder prediction 371 400 - -
Trre1g03163 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 58 409 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03163 Trre-Chr1 27545302 27549757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03163 316 380 C2C2-CO-like Transcription Factor Family AT5G24930 41.538 6.00e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g03163 CCT 5.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03163 - - aprc:113871720 552.747