Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03152 ATGAGTGAAGATGGATCAAGGGGAAAGACAAAGGACGACAACGGACATGTCCGCTACCGAGGTGTTCGATGCCGACCGTGGGGGAAGTTTGCGGCCGAGATTCGTGACTCCCATAACCAGGGTCAGAGGATTTGGTTAGGAACTTTCAACACGGCCGAGGAAGCCGCTAGAGCTTATGATAGAGCTGCTTATGAAATGAGAGGTTCAGCTGCAATCCTTAATTTTCCAAGTGAATATAATATGAGAGGTAACACTTCTGCTTCATCATCTTCATCTTCTTCGTCTTCGAGGAATGCAAATGCGGGAAGCGGAGGAAGACAAGTGTTTGAGTTTGAATACTTGGATGATAAGTTGTTGGATGAGCTTCTTGATTTTGAAGAGAAAAAAAAGAAGGGACCTTGA 402 0.4527 MSEDGSRGKTKDDNGHVRYRGVRCRPWGKFAAEIRDSHNQGQRIWLGTFNTAEEAARAYDRAAYEMRGSAAILNFPSEYNMRGNTSASSSSSSSSSRNANAGSGGRQVFEFEYLDDKLLDELLDFEEKKKKGP 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03152 133 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Trre1g03152 133 FunFam Ethylene-responsive transcription factor 2 17 78 - -
Trre1g03152 133 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trre1g03152 133 MobiDBLite consensus disorder prediction 81 104 - -
Trre1g03152 133 PANTHER DNA-BINDING DOMAIN 15 127 IPR044808 GO:0003700|GO:0009873
Trre1g03152 133 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Trre1g03152 133 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03152 Trre-Chr1 27419219 27419620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03152 13 130 AP2-EREBP Transcription Factor Family AT3G23230 61.111 2.10e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g03152 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03152 - - gmx:100775830 156.762