Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03145 ATGGAAGGAAACAAAGGATGGAGTGTAATAGAAGAAAATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTTATTGAATATGTCAAGTTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTACAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCAGATAACCCCACAAGAAGAAAGCATAATACTAGAACTTCATTCTAGGTGGGGAAATAGATGGTCGACAATTGCAAGAAGTTTACCTGGAAGAACGGACAATGAAATAAAGAATTATTGGAGGACTCATTTTAAGAAAAAGACAAAAAGTCCTTCCGATGCTGTTGAAAAGGCGAAAAAACGTTCTTTCAAGAGACAGCAACAACAACAATTGAAGCATCAGCAGCAGCAGCAACAGGTTCAGCAGCAACAATTTCAATACAATTTGGACATGAAAGGGATCATAGACTTATTGCTAGATGAAAATGAGTACTATAATGTGCCATCTACATCTCAAGAAACACAAGAAATGGTTTCCATGTATGCAGATACACCAGAACAACAAGGCTACTTTTACTCTATGCTCAATGATAATAATGGTAATGTCTATGGACAAGAGTCTTCAAATGAAGAAAATTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAGCTAATGTGCACAATTTAGTTACTCCCTTTTGTTAA 777 0.381 MEGNKGWSVIEENRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLTGLRRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHSRWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDAVEKAKKRSFKRQQQQQLKHQQQQQQVQQQQFQYNLDMKGIIDLLLDENEYYNVPSTSQETQEMVSMYADTPEQQGYFYSMLNDNNGNVYGQESSNEENLWDGLWNLDDVLGNSMQLMLQAKPANVHNLVTPFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03145 258 CDD SANT 74 115 IPR001005 -
Trre1g03145 258 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Trre1g03145 258 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Trre1g03145 258 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Trre1g03145 258 MobiDBLite consensus disorder prediction 118 134 - -
Trre1g03145 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Trre1g03145 258 Gene3D - 17 69 - -
Trre1g03145 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Trre1g03145 258 CDD SANT 19 64 IPR001005 -
Trre1g03145 258 MobiDBLite consensus disorder prediction 118 148 - -
Trre1g03145 258 Coils Coil 135 155 - -
Trre1g03145 258 FunFam Myb transcription factor 17 69 - -
Trre1g03145 258 SMART sant 69 117 IPR001005 -
Trre1g03145 258 SMART sant 16 66 IPR001005 -
Trre1g03145 258 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Trre1g03145 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 226 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g03145 258 FunFam MYB-related transcription factor 74 118 - -
Trre1g03145 258 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Trre1g03145 258 Gene3D - 74 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03145 Trre-Chr1 27368347 27369714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03145 12 258 MYB Transcription Factor Family AT3G24310 55.859 3.54e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g03145 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03145 K09422 - gmx:100782089 368.237