Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03144 ATGTATTCAGAAATAATGGAAGGAAACAAAGGATGGAGTGTAATAGAAGAAAATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTTATTGAATATGTCAAGTTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTACAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCAGATAACCCCACAAGAAGAAAGCATAATACTAGAACTTCATTCTAGGTGGGGAAATAGATGGTCGACAATTGCAAGAAGTTTACCTGGAAGAACGGACAATGAAATAAAGAATTATTGGAGGACTCATTTTAAGAAAAAGACAAAAAGTCCTTCCGATGCTGTTGAAAAGGCGAAAAAACGTTCTTTCAAGAGACAGCAACAACAACAATTGAAGCATCAGCAGCAGCAGCAACAGGTTCAGCAGCAACAATTTCAATACAATTTGGACATGAAAGGGATCATAGACTTATTGCTAGATGAAAATGAGTACTATAATGTGCCATCTACATCTCAAGAAACACAAGAAATGGTTTCCATGTATGCAGATACACCAGAACAACAAGGCTACTTTTACTCTATGCTCAATGATAATAATGGTAATGTCTATGGACAAGAGTCTTCAAATGAAGAAAATTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAGCTAATGTGCACAATTTAGTTACTCCCTTTTGTTAA 792 0.3775 MYSEIMEGNKGWSVIEENRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLTGLRRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHSRWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDAVEKAKKRSFKRQQQQQLKHQQQQQQVQQQQFQYNLDMKGIIDLLLDENEYYNVPSTSQETQEMVSMYADTPEQQGYFYSMLNDNNGNVYGQESSNEENLWDGLWNLDDVLGNSMQLMLQAKPANVHNLVTPFC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03144 263 Gene3D - 22 74 - -
Trre1g03144 263 Gene3D - 79 123 - -
Trre1g03144 263 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre1g03144 263 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Trre1g03144 263 CDD SANT 24 69 IPR001005 -
Trre1g03144 263 FunFam Myb transcription factor 22 74 - -
Trre1g03144 263 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Trre1g03144 263 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Trre1g03144 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre1g03144 263 MobiDBLite consensus disorder prediction 123 153 - -
Trre1g03144 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 69 IPR017930 -
Trre1g03144 263 Coils Coil 140 160 - -
Trre1g03144 263 SMART sant 21 71 IPR001005 -
Trre1g03144 263 SMART sant 74 122 IPR001005 -
Trre1g03144 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 231 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g03144 263 CDD SANT 79 120 IPR001005 -
Trre1g03144 263 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Trre1g03144 263 FunFam MYB-related transcription factor 79 123 - -
Trre1g03144 263 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03144 Trre-Chr1 27368347 27369729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03144 17 263 MYB Transcription Factor Family AT3G24310 55.859 4.48e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g03144 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03144 K09422 - gmx:100813935 373.629