Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03120 ATGTGTATTTATGTATCTGCAGATCCCAAATGTCCTGATCCTATCCCTGGTTTTGAACTTTGTCCTTGCTGTCCTTACACTAAAGCAGACTTTGTTGATTATGTTGATTATGGTAAGTATGAGTCTGCTGAAAGCAAACATTATGGGGAGATGCTGGGTGGCGTGATGATACCTTACTACCTTTTTCCTTTAATTCAAGAGATGGCTGATAAGTCTGATGATAAAACTCTTGTGGTAAGCAATATCACACGTGACATTAGGGACAACGCTAAATTCCTTGGGCTTTTTCAGGCTTATGGCAAGGTCGAAAGTGCCAAGCTTCTCCCTTGTCATTCAGAAAAAGACATTGTTGGGGACATTGGCTTTGTTACCTTTGAATCCAAGAAAGATGCTCAGCAGGCTATGTATGAACTCAATGGCGCTGGCCCACGTGGCAAGGATGGCCGCGTTCCTATACTTGATTGGGCCTCCCTCTTAAAAAGAAAAAACTAA 492 0.4228 MCIYVSADPKCPDPIPGFELCPCCPYTKADFVDYVDYGKYESAESKHYGEMLGGVMIPYYLFPLIQEMADKSDDKTLVVSNITRDIRDNAKFLGLFQAYGKVESAKLLPCHSEKDIVGDIGFVTFESKKDAQQAMYELNGAGPRGKDGRVPILDWASLLKRKN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03120 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 145 IPR000504 GO:0003723
Trre1g03120 163 CDD RRM_SF 77 146 - -
Trre1g03120 163 Gene3D - 64 158 IPR012677 -
Trre1g03120 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 158 IPR000504 GO:0003723
Trre1g03120 163 SUPERFAMILY RNA-binding domain, RBD 30 144 IPR035979 GO:0003676
Trre1g03120 163 SMART rrm1_1 76 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03120 Trre-Chr1 26977063 26977554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03120 67 157 Eukaryotic Initiation Factors Gene Family AT3G11400 28.571 2.51e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03120 - - mgr:MGG_08840 52.373