Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03101 ATGGAACAGGAAGAGCACGAAGTTTACGGTGCAGACATTCCTGATGAAGAGGTTGACATGGACGCTGACATAGATGTTGAACAACAAGAAGGAGATGAAGAACTCGCTTCCAATCACACCACCAAGGAATTGGAAGACATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTTGATGCTCGATCGATCTATGTCGGTAATGTTGACTACGCCTGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTGACAATACTGACAGACAAATTTGGCCAACCGAAAGGATTTGCTTACGTAGAATTTGTTGAGGTTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTAAAGGTGTCTGCGAAACGTACAAATGTACCTGGATTGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGAGCAAGGAGGGCTTTCATGCCTTCACCATTCTATCCACCATATGCTTACGGGGTTCCAAGATATAGAAGACCAACCCGATACCGGCCATACTAG 654 0.4587 MEQEEHEVYGADIPDEEVDMDADIDVEQQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRAFMPSPFYPPYAYGVPRYRRPTRYRPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03101 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Trre1g03101 217 SUPERFAMILY RNA-binding domain, RBD 84 190 IPR035979 GO:0003676
Trre1g03101 217 FunFam Polyadenylate-binding protein 1 88 174 - -
Trre1g03101 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 25 191 - -
Trre1g03101 217 Gene3D - 13 174 IPR012677 -
Trre1g03101 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Trre1g03101 217 CDD RRM_II_PABPs 95 166 - -
Trre1g03101 217 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g03101 217 Coils Coil 37 71 - -
Trre1g03101 217 SMART rrm1_1 95 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03101 Trre-Chr1 26890000 26894531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03101 95 166 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 8.88e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03101 K14396 - gmx:100527545 363.614