Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03096 ATGGCAGATGCAGAGAGTCCAGCTGGTGGAAGCCACGAAAGTGGAGGCGAACAGAGTCCACATGGTTCTTCTGCTGCTCGTGAACAAGATCGTTACTTGCCTATAGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTCCAAATGGAAAAATCGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCTAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGTGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGAGAGGGTGACAGTAAAGGATCTGTTAGAAACGATGGATCTGGTAGACGAGATCAAGTTGGCCCTGCAGTTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAACTATATTGATTCCCAGGTGCATCCACAACATCTGGTTATGCCTTCAATGCATAACCATGAATAG 516 0.4186 MADAESPAGGSHESGGEQSPHGSSAAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDSKGSVRNDGSGRRDQVGPAVQNAQFVHQGSLNYIDSQVHPQHLVMPSMHNHE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03096 171 SUPERFAMILY Histone-fold 29 130 IPR009072 GO:0046982
Trre1g03096 171 Gene3D Histone, subunit A 21 150 IPR009072 GO:0046982
Trre1g03096 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Trre1g03096 171 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Trre1g03096 171 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Trre1g03096 171 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Trre1g03096 171 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre1g03096 171 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Trre1g03096 171 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g03096 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03096 Trre-Chr1 26761485 26764855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03096 2 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.251 6.00e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre1g03096 CBFD_NFYB_HMF 8.5e-29 CL0012