Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03093 ATGATCCATCTAAAAGAACAACGAAATAGACAATCTTCGAGATGTGGATGCAAGGCAAGCATGACAATCAAATTGAAGAAATCCTTTGAGATTTTTCCCGAAGAATGGCAGGTTACTGAATTTATATCCAACCACAATCATGATTTGCTACCTCCAGATCAAGTGCGCTTCCTTTCATCTTACCGCAATATTTCTAAGGAAGACGAGAAGCGGATTTTGCTATTAAAAGAAGTTGATCTTTCGGTTAAGCAAATAATGCGTGTTATGGAGCTTGAGAAAAATGTAAAGCATGGAGATCTTCCATTTCTTCGGAAAGATATACATAATTTCTTTAACAAGATTCATCATGATAACATGAATGGTGATGCTAATGATCTTCTACAATTATATGCTGTTGCATTTGATACCACTTACAAGGTTGATCTTGTCATTGAGGACATTGGGCAACAACAGTTACATCATACCATGTTGAATACATATAGGGGATCTTCACTTCGATCTTTATCTCCTTTAGAAGAGCAAGTTTACAATATTTTCACAACTTTTGCGTTCAAGAAGTTTCAGGAGGAGTTTGAGAGGGCAACTCAATACAAGATTTGTGAAGAAAATCATGTAGAATTTACTGTGAAATATTACAAGGAGCAACACTCACAAAAACATAAAGTCTTATGCGATGGTGATGTGGTTAGTTGCAGTTGTAAGAATTTTGAGTTTTGCGGTATTCTTTGTAGTCATGTATTGACAATATTCCTTCATAAAGATTGTTTTGAGATTCCAATGAGTTACTTGCCATTACGTTGGTGTCGTGATGAATTTCAAAGACCGGTTGAAGTCAATATGATGTTTAGTGAAGGAGGGCCGATTGAGAATGTGGAGAATGCAGTAGACTTGATTAAAAATCCGCCAAAGTCAAATACAAAAGGTCGTCCCAAAAAAAACCGATCAAAAGGTGGAAATGAATCTTCAAAGAGAGCAAGAAGCTGTACTTTTTGCAAGAAAAGTGGCCACGATGTTACCACATGTCCGAAAAAAGAAAGTTACGTTCAACCATCAACCACCAAGAAGAGGAAGAATGAAGATCAAGCACAACAAAATTTGAATCCTGTTTTTTATCTTAAGTCTTCTTAG 1128 0.3608 MIHLKEQRNRQSSRCGCKASMTIKLKKSFEIFPEEWQVTEFISNHNHDLLPPDQVRFLSSYRNISKEDEKRILLLKEVDLSVKQIMRVMELEKNVKHGDLPFLRKDIHNFFNKIHHDNMNGDANDLLQLYAVAFDTTYKVDLVIEDIGQQQLHHTMLNTYRGSSLRSLSPLEEQVYNIFTTFAFKKFQEEFERATQYKICEENHVEFTVKYYKEQHSQKHKVLCDGDVVSCSCKNFEFCGILCSHVLTIFLHKDCFEIPMSYLPLRWCRDEFQRPVEVNMMFSEGGPIENVENAVDLIKNPPKSNTKGRPKKNRSKGGNESSKRARSCTFCKKSGHDVTTCPKKESYVQPSTTKKRKNEDQAQQNLNPVFYLKSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03093 375 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 166 333 IPR031052 GO:0006355
Trre1g03093 375 MobiDBLite consensus disorder prediction 298 375 - -
Trre1g03093 375 ProSiteProfiles Zinc finger SWIM-type profile. 207 254 IPR007527 GO:0008270
Trre1g03093 375 SUPERFAMILY Retrovirus zinc finger-like domains 313 348 IPR036875 GO:0003676|GO:0008270
Trre1g03093 375 Pfam FAR1 DNA-binding domain 5 51 IPR004330 -
Trre1g03093 375 MobiDBLite consensus disorder prediction 313 331 - -
Trre1g03093 375 SMART 26again6 229 256 IPR006564 GO:0008270
Trre1g03093 375 Pfam SWIM zinc finger 221 253 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03093 Trre-Chr1 26726463 26728464 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g03093 FAR1 7.4e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03093 - - mtr:112421042 398.667