Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03077 ATGACCATCTCAATGTCCATGTGCAGATTAATTAGACAACCTTTAATAAGCAATGTTCCATGTAGTGGCCAAAAAATAAACATGAGACAAATTCAAAAGGAAAATGTAGTTTTGGTCATGGGATCAACAGGAACAGGAAAGTCAAAGCTTTCAATTGACTTAGCAAATTATTTCCCATCAGAAATAATCAATTCAGATAAAATTCAAATCTATGAAGGTCTTGACATAGTAACAAACAAAATCACCAAAGAAGAACAAAAAGGAATACCTCATCATATACTAGGAACACATAACCCCAACATAGAGTTCACTTCCAACGATTTTCGCGAAAAATCAACTTTGGCCATTGATTCAATCACGAGCCGCGAACATCTTCCGATCATTGTTGGTGGCTCGAATTCCTACCTTGAAGCCTTAGTTGACGATGACGACTATAATTTTCGATCTAGGTACAATTTTTGTTGTCTTTGGGTCGATGTATCAATGCCAATTCTTCGTTCGTACATAGATCAACGCGTTGATCAAATGTTTAACACCGGAATGGTTAATGAGTTACGACCCTTTTATAATCCGAACGGAGATTACTCAAAAGGGATACGAAAAGCCATTGGTGTTCCCGAATTCGATGAGTATTTTCGAAAGGAAAGTTTTGTGGACGACGAAACAAAGAAAATGTTGCTAGAAAAAGCTTTGAGTGAAATGAAGATGAATACATGGAAATTAGCTAGGAAACAACTTGGAAAGATTCATTGGCTCAAGAATGTTAAGAGATGGAATATTCATAAGTTAGATGCTACACCTGTTTTTAAGAAACATGGAAAAGAAGCTGATGAAACATGGAAGAAGATTGTGGCAGAACCTAGTGCTATGATTGTGGCACAATTTTTATATAACTCAAGAAATTCTACTAATGTTGTGAACTCTTCTTCTTCAAATCTTAGAGTGCCAATTTCTCAGAGTGATCTTATGGCTGCAGCAACATGTTAG 987 0.3617 MTISMSMCRLIRQPLISNVPCSGQKINMRQIQKENVVLVMGSTGTGKSKLSIDLANYFPSEIINSDKIQIYEGLDIVTNKITKEEQKGIPHHILGTHNPNIEFTSNDFREKSTLAIDSITSREHLPIIVGGSNSYLEALVDDDDYNFRSRYNFCCLWVDVSMPILRSYIDQRVDQMFNTGMVNELRPFYNPNGDYSKGIRKAIGVPEFDEYFRKESFVDDETKKMLLEKALSEMKMNTWKLARKQLGKIHWLKNVKRWNIHKLDATPVFKKHGKEADETWKKIVAEPSAMIVAQFLYNSRNSTNVVNSSSSNLRVPISQSDLMAAATC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03077 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 296 IPR039657 -
Trre1g03077 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 144 IPR027417 -
Trre1g03077 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Trre1g03077 328 Pfam IPP transferase 69 142 - -
Trre1g03077 328 Pfam IPP transferase 148 246 - -
Trre1g03077 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Trre1g03077 328 Gene3D - 33 296 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03077 Trre-Chr1 26398434 26399420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03077 149 296 C2H2 Transcription Factor Family AT2G27760 30.286 8.24e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03077 K10760 - gmx:100803964 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03077 1 26398434 26399420 Trre1g03077 1 26398434 26399420 ECH