Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03076 ATGGACGAAGAAAGTAACAAAGACAACAACAGTTCAGAGATAGGATCATATGACATTGAAGAAACAAGCAGCCATGATGTCTCTGAGGATCATCAAATTCAAAATCAACAATTTTTTGGAACAAGTGGGGTTCAATGGAGTTCTTTACCAAAACTACCTCAAAATAATTATGTTGAATATCTATCTGAATCTTCAGCTAGTTATCTTCCAAACCCTATGATTCATGGAAATAATTATCAAACACTTGGTGGTAGTAGCAGTAGCTTTAATGATTCAGGAAAATCTGCTTTTGCTTTTAAGTTGATTGATTCTTCAAGTAATGATTTTGGCATTAGGAAGCGTGGTGGGTTTTGGAGAAATGATGAACAAGAGGAAGTGATTAAAGCTGAAATTGGAAGTAGTCAAAATCTTCTTTGTGCTAAGGCTCATGCAACATGGACACCTAATTCAGTTGGAGATAAGCAGAATGCTTCAAGATTTGATCCAATGGGAATAGTTTCTGCACCTTCTTTACTTCCAAGATCAAGAGGTAGCTCCTCAAAACTGAAAAGTGAGAAAATACGTTACTCCGATCGTAAACGCAGGCAACGTATCGCTGACAACCTCAAAGCTTTACACGAATTGCTTCCGAATCCAGAAGTGGGTAGTCAAGCTCATATACTAGATGACATAATTGACTATGTCAATTACTTGCAAATTCAAATAAAGGAACTGAGTGGTAGTAAATTGCAAGCTGATTCAAATGCTATACCACTAGTTTTTCATGAGGGTTATGGACATTATATAAAGGAACAAATGCTTAATGAGCCACTTGAAGAGATAATGGGAAAACTACTTGAAGAAGATTCAGCAGCAGCAAGTCAGCTACTTGAAAACAAAGGTCTTATTCTACTGCCTATTGCTCTTGCTGATGACTTGAACCAAGCTATACAATTGTGGAACCAAGCTAGCAGCTAA 957 0.3699 MDEESNKDNNSSEIGSYDIEETSSHDVSEDHQIQNQQFFGTSGVQWSSLPKLPQNNYVEYLSESSASYLPNPMIHGNNYQTLGGSSSSFNDSGKSAFAFKLIDSSSNDFGIRKRGGFWRNDEQEEVIKAEIGSSQNLLCAKAHATWTPNSVGDKQNASRFDPMGIVSAPSLLPRSRGSSSKLKSEKIRYSDRKRRQRIADNLKALHELLPNPEVGSQAHILDDIIDYVNYLQIQIKELSGSKLQADSNAIPLVFHEGYGHYIKEQMLNEPLEEIMGKLLEEDSAAASQLLENKGLILLPIALADDLNQAIQLWNQASS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03076 318 SMART finulus 188 237 IPR011598 GO:0046983
Trre1g03076 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 245 IPR036638 GO:0046983
Trre1g03076 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Trre1g03076 318 Gene3D - 182 250 IPR036638 GO:0046983
Trre1g03076 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 304 - -
Trre1g03076 318 Pfam Helix-loop-helix DNA-binding domain 191 232 IPR011598 GO:0046983
Trre1g03076 318 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g03076 318 CDD bHLH_AtbHLH_like 190 239 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03076 Trre-Chr1 26386386 26388845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03076 164 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 35.758 1.98e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g03076 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03076 - - cam:101507064 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03076 1 26386386 26388845 Trre1g03076 1 26386386 26388845 ECH