Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03059 ATGTGGTATAGGAATTTATTACCTTTGACAGTTGTTTGGGTTGCCAACAGAGAAATGCCTGTGAAGAATAATTCTGGAATCTTGAAACTCGATGAAAATGGAGTTCTTGTGGTTCTTAATGGTGCAAATGGAACAATTTGGTCGTCTAATATGTCGAACAAGTTGTTGAATGATTCGATAACTGCACAGTTATTGGAAACGGGAAATCTTGTGTTGAGAATTGGGAAGGATACTGTTTTGTGGCAGAGTTTTGATTATCCGTGTGATACGTTATTGCCAGGAATGATGCTTGGATGGAACTTAGTAAGCGATCTTAACCGGTTTTTGACATCTTGGAAAAGTGCAGATGATCTGGCAATTGGAGATTATTCTGTGAAAATTGAGAAAAAAGGATTGCCTCAGCTAGCTATTATGAAGAGATCTGTAAATAAATTTAGAATTGGGTCATGGAATGGACTTGGTTTTAGTGGATATCCAATGCAACAATTGAAGCAGAAACCAAGATTTAAAATTGTCTTCAATGAAAAAGAATTTTATAATCAATTTGAAGGAATTGATCCCTCTATTGTCTCCATTTATTCGCTTTCCACTTCAGGTAATTTGCAGATTTTAGCGTGGACAAGTAAAAAAAGCAGTAGAATAGTTTTCCACGCTGCAGGAGAGGATTCATGTGATAATTACGCTATGTGTGGTGCTAATTCTATATGCGATATGAATGGCAACGTTCCAAAATGTGAATGCTTGAAAGGTTTTGTTCCTAAGTTTCCTAAACAATGGAATATTGACTATTGGTCTAGCGGTTGTGTTCAAAGGTTTAATTTTACTTGTGGAGACGATAATTTAGGCGGATTCTTAACGTACAAAGAAATGAAATTACCAGACACGTCTTTGTCATGGTTTAGCGAAACCATGAACCTTATGGATTGTCAGAAGTCATGTCTTAAAAATTGTTCGTGCACGGCTTATTCAAATTTGGATATTCGAAATGGAGGAAGTGGTTGTGTGCTTTGGTTTGGTGATCTGGTTGACATGAGAACATCACAATGGGGACAACAGTTTTATATCAGAGTCTCTTCTTCTGTACTAAATGAATTTGCACCTGCTGCAGTTAATGGCCACCAAAACAAGAAGATCGAAATCATAGTGGGCGCGGTGTCTTTTGGATTAATTATATGTGTCTTCTTAATAATACTTAGTAAGCGAGTGACAGCGCGAGTATATAACTTTGTACCATTTCAATGGCGGCAAGAATATTTTAAAGTGATAAAGGAAGACATGGATCTTCCAATAGTTGATTTGTCAATTATTGTTAAAGCCACAGATAATTTTTCTTGTGGAAACAAACTTGGAGAAGGTGGATTTGGACCGGTATACAAGGGTACCCTCACAGATGGAAAAGAGGTTGCCATCAAACGAAACTCAAAGATGTCCGATCAAGGATTGGATGAGTTTAAAAATGAAGTTTTTATGATTGCAAAACTTCAGCATCGTAATCTTGTGAAGCTTCTAGGTTGTTGTATTGAAGGAGAGGAAAAAGCGTTGATCTATGAATACATGCCCAACAGGAGTTTGGACTACTTCATCTTTGATGAAACAAGAAGCAAGCTCTTGGGATGGTCTCAACGTTCCTACATTATTGCTGGCATTGCTCGAGGTCTTCTCTACCTTCATCATGACTCCAGACTAAGAATTATTCACAGAGATTTGAAAACTAGCAATATCCTACTAGATGCCCATATGAATCCAAAAATCTCAGATTTTGGTCTAGCTCGAATATTTGGGGTTGATCAAATTGTAGCCAAAACTAAGAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCTGTCCATGGTCATTACTCCATAAAATCAGATGTCTTTAGTTTTGGTGTATTAGTACTAGAGATAATTAGCGGGAAAAAGAATAAAGGATTTTCGGATCCGGAACACTCCCTTAATCTTCTTGGACACGCATGGAGACTCTGGACTGAATACAGAGCAATGGAATTGCTAGATAGACACTTACTTGAAACATGTAATTCGTCTGAAGTCTTTAGATGCATACATGTAGGTTTGTTATGTGTACAACAAAAATCAGTGGATAGACCAGACATGTCTTCTGTCATTCTTATGCTGAATGGTGATAAACTGTTACCTCAGCCAAAGATGCCTGGATTTTACACCGGAACGGGTTTACCTGAAGCAATTTCTTTAAATCAGATGTCAGTAACTACATTTGCAGCAAGATAA 2256 0.3746 MWYRNLLPLTVVWVANREMPVKNNSGILKLDENGVLVVLNGANGTIWSSNMSNKLLNDSITAQLLETGNLVLRIGKDTVLWQSFDYPCDTLLPGMMLGWNLVSDLNRFLTSWKSADDLAIGDYSVKIEKKGLPQLAIMKRSVNKFRIGSWNGLGFSGYPMQQLKQKPRFKIVFNEKEFYNQFEGIDPSIVSIYSLSTSGNLQILAWTSKKSSRIVFHAAGEDSCDNYAMCGANSICDMNGNVPKCECLKGFVPKFPKQWNIDYWSSGCVQRFNFTCGDDNLGGFLTYKEMKLPDTSLSWFSETMNLMDCQKSCLKNCSCTAYSNLDIRNGGSGCVLWFGDLVDMRTSQWGQQFYIRVSSSVLNEFAPAAVNGHQNKKIEIIVGAVSFGLIICVFLIILSKRVTARVYNFVPFQWRQEYFKVIKEDMDLPIVDLSIIVKATDNFSCGNKLGEGGFGPVYKGTLTDGKEVAIKRNSKMSDQGLDEFKNEVFMIAKLQHRNLVKLLGCCIEGEEKALIYEYMPNRSLDYFIFDETRSKLLGWSQRSYIIAGIARGLLYLHHDSRLRIIHRDLKTSNILLDAHMNPKISDFGLARIFGVDQIVAKTKRMVGTYGYMPPEYAVHGHYSIKSDVFSFGVLVLEIISGKKNKGFSDPEHSLNLLGHAWRLWTEYRAMELLDRHLLETCNSSEVFRCIHVGLLCVQQKSVDRPDMSSVILMLNGDKLLPQPKMPGFYTGTGLPEAISLNQMSVTTFAAR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03059 751 ProSiteProfiles Bulb-type lectin domain profile. 1 85 IPR001480 -
Trre1g03059 751 Pfam PAN-like domain 282 344 IPR003609 -
Trre1g03059 751 SMART blect_4 1 87 IPR001480 -
Trre1g03059 751 SMART ntp_6 279 357 IPR003609 -
Trre1g03059 751 CDD STKc_IRAK 449 716 - -
Trre1g03059 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Trre1g03059 751 ProSiteProfiles PAN/Apple domain profile. 276 358 IPR003609 -
Trre1g03059 751 Gene3D Transferase(Phosphotransferase) domain 1 519 720 - -
Trre1g03059 751 PIRSF SRK 1 748 IPR024171 GO:0004674
Trre1g03059 751 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 705 - -
Trre1g03059 751 SUPERFAMILY Protein kinase-like (PK-like) 426 714 IPR011009 -
Trre1g03059 751 Pfam S-locus glycoprotein domain 145 255 IPR000858 GO:0048544
Trre1g03059 751 SMART serkin_6 443 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03059 751 CDD B_lectin 1 87 IPR001480 -
Trre1g03059 751 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 519 722 - -
Trre1g03059 751 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 410 518 - -
Trre1g03059 751 ProSiteProfiles Protein kinase domain profile. 443 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03059 751 CDD PAN_AP_plant 277 358 - -
Trre1g03059 751 Gene3D - 2 84 IPR036426 -
Trre1g03059 751 Gene3D Phosphorylase Kinase; domain 1 412 518 - -
Trre1g03059 751 Pfam D-mannose binding lectin 10 113 IPR001480 -
Trre1g03059 751 Pfam Protein tyrosine and serine/threonine kinase 445 710 IPR001245 GO:0004672|GO:0006468
Trre1g03059 751 Gene3D Hepatocyte Growth Factor 275 356 - -
Trre1g03059 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 117 IPR036426 -
Trre1g03059 751 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 275 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03059 Trre-Chr1 26302721 26305803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03059 380 728 Receptor kinase-like Gene Family AT4G23230 53.714 5.45e-126 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g03059 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03059 - - aprc:113865090 1023.85