Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03047 ATGGCTTCTCAACCTCCAATAATAGGTAGTAGTAGTAAGCTTCAAAATATGTTGCAGGCTGCAGTGCAATCTGTTCAATGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAATGATTCTGGTATGGGCTGATGGATATTACAATGGAGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTAAGTGCAGAGGAAGCATCTCTACAGAGAAGCCATCAACTAAGAGAGCTGTATGAATCATTATCCGCCGGAGAGACGAACCCGCCAACTCGCCGGCCTTGTGCTTCCTTGTCGCCAGAGGACCTAACAGAATCTGAGTGGTTCTACTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTCGGGTAA 378 0.4577 MASQPPIIGSSSKLQNMLQAAVQSVQWTYSLFWQLCPQQMILVWADGYYNGAIKTRKTVQPMEVSAEEASLQRSHQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03047 125 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 124 IPR025610 -
Trre1g03047 125 MobiDBLite consensus disorder prediction 82 101 - -
Trre1g03047 125 PANTHER TRANSCRIPTION FACTOR TT8 9 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03047 Trre-Chr1 26205002 26206247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03047 13 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 71.681 3.12e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03047 - - cam:101506726 232.261