Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03043 ATGATTTGCGTCATATACAAACTACAACAGACTGTGGTATGCATTCCTGTATTGGACGGCGTTGTTGAATTCGGCACAATAGAAAAGATTCAAGAAGACCTTAATTTCATCAAACATGTGAAGAGCTTCTTCGTAGACAACCAATCTATGCCGCCAAAGCCAGCACTATCGGAACATTCAACCTCTAACCCAACTTCCTCAAATGATCACATTCCCATCATCATGTACACCGTGGCAGACCCACCCACGACAAATCCCAACCAAGACGATATGGATGAAGACGAGGAAGAGGAAGGAGAAGATGATGAAGAAGATGAAGTTGAATCTGGATCCGATGATGAAATAGGAGGTTGTAATCGACGTGCAACTTCAATGGCAGCGGTTGTGGAGCCGAGTGAGCTTATGCAGATTGAAATGCCCGACGATATTCGAGTTGGATCACCAAATGATGGGTCGAATAATTTGGACTCAGATTTTCATTTGCTAGCCGTGAGTAATCAAGGGAACCCGTTAGGTCAAGTTGACTCTTACAAAACTGTGTCGACACAGAGGTGGGGTCCAATTGAAGACCCGTTACAAGTTCAACCGCCAACTTCAGTGCTTCATCATGCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCATTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCCATCAATTACATCACTTACTCAACTCAATCATCTTTCACCAACTGGACCAACCATAACTTCCACACTCCGCCGCCGGACACCGCCACCTCACAATGGCTCCTCAAATACATCCTCTTTAAGGTCCCATACCTCCACACAAAAAACCACGACGAAACCTCCCCCCAAACCAATGACACGGCCGGAGGACTCAATAATGATCCCTCTGCCCGGCTACGTGGTAAAGGAGGACCGCAAGACGAGCTCAGTGGGAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTCAATGAGAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTAACGAAGATGGATAAAGCTTCTATATTAGGTGACACGATCGAGTATTTGAAACAGCTTCGGAGAAAGATTCAGGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAGTGGCGTAACCGTTATGGTTGGTCCCATTGAGAAGGAAAAAGTGAGGATTGTGGAAGGCAGTGGTGGGGCTAATAGAGCGAAAGCGGTTGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCGTTGTTGGAGATAGAGTGTTTACATCGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTGAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAACGGTGTTTTTGTTGCAGAATTAAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 1506 0.4456 MICVIYKLQQTVVCIPVLDGVVEFGTIEKIQEDLNFIKHVKSFFVDNQSMPPKPALSEHSTSNPTSSNDHIPIIMYTVADPPTTNPNQDDMDEDEEEEGEDDEEDEVESGSDDEIGGCNRRATSMAAVVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLAVSNQGNPLGQVDSYKTVSTQRWGPIEDPLQVQPPTSVLHHALEDLTQEDTHYSQTVSTILQNQSTRWINSPSINYITYSTQSSFTNWTNHNFHTPPPDTATSQWLLKYILFKVPYLHTKNHDETSPQTNDTAGGLNNDPSARLRGKGGPQDELSGNHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERSGVTVMVGPIEKEKVRIVEGSGGANRAKAVEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03043 501 Coils Coil 354 381 - -
Trre1g03043 501 MobiDBLite consensus disorder prediction 283 322 - -
Trre1g03043 501 MobiDBLite consensus disorder prediction 87 112 - -
Trre1g03043 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Trre1g03043 501 MobiDBLite consensus disorder prediction 53 72 - -
Trre1g03043 501 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 44 IPR025610 -
Trre1g03043 501 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Trre1g03043 501 Gene3D - 317 386 IPR036638 GO:0046983
Trre1g03043 501 SMART finulus 321 370 IPR011598 GO:0046983
Trre1g03043 501 MobiDBLite consensus disorder prediction 51 119 - -
Trre1g03043 501 MobiDBLite consensus disorder prediction 283 299 - -
Trre1g03043 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 385 IPR036638 GO:0046983
Trre1g03043 501 PANTHER TRANSCRIPTION FACTOR TT8 10 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03043 Trre-Chr1 26189757 26193851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03043 10 61 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 65.385 1.29e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g03043 HLH 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03043 - - cam:101506726 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04483 13 52388960 52389449 Trre1g03043 1 26189757 26193851 PCT