Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03021 ATGAGAGAAGGGTTGAGATCTCGGACTCGGTTGGGGAAGGGTTCTGGTGAAGGAGAAGTTGTTCACAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTGGAACGTACGCAGGCCGTAGTTGAGGCTTTATTTTCAGGTGATGAGGGTTTAGTGGAACCTACATCATTGATTGAGAAGAAGGGTGAAACTGAGGCATTGGTTTCGGGTAACGAGGGTTTAGTGGAGCCTACTGCATTGATTGAGAAGAAGGGCGAAACAGAGGCTTTAGTTTCGGGTGGCGACGGTTTAGTGGAGCCTACTGCATTGATTGAGAAAAAGGGCGAAACAGAGGCTTTAGTTTCAGGTGATGAGGGTTTAGTGGAGCCTACCTCATTGATTGAGAAGAAGGGTGAAGTTGAGGCTTTATTTTCGGGTGATGAGGGTTTAGTGGAACCTACCTCATCAATTGAGAAGAACGGTGAAACTGGGGCTTTAGTTTCGGGTGATCAAAGTTTAGTGGAGCCTACCTCATCAATTGAGAAGAAGGGTGAAACTGGGGCTTTAGTTTCGGGTGATCAAAGTTTAGTGGAACATACCTCATCTATTGAGAAGAAGGGTGAAGTTGAGGCTTTAGTTTCGTGTGATGAGGTTTTAGTGGAACCTACCTCGTCGATTGAGAAAAAGGGCGAAGTTGAATGTGCAGGCGTTGTTGAGTGCGCTGGTGAAGTTGAATGTGATGTGAAAACAAAATTTGATTTTGATTTAAACCTGAGTTTGAGTGTAAATGTTGACATAGATGAAAATAACATAGACGAGAATTGTAACAGTAGTCCTAGGAGTTGTTTAAAAGATGGGCATAGTATTGCGGAAGCTGATAAGAAGGAGAATGAAGGGTTGAGTGGGGGTCGAGTATTGCGGTCCAGGTTAAAGAGGGGAGATGACAGAAGAGCTTATGCAGGGAATAATGGAGAACATGGTCGATTGGAGATGATACAAGTCAAGAATGAGCTTGAAGAAGTTGATGAGGTTTTGACTGATGGTAAAAAGAATGATAGGGTTAGTATGAACATGGGAGGGAAGGGAAAGAAGAAATTGAAACGGAAGCGCGGGAGGCCTCCCAAGACAGAAATAAAAGAGAAAGATCAATTAGATTATCAGCCACCGCGTAAGCTTGGGAGGCCTCCGAAAAGAGAAATAAAAGAGAAAGATCAATTAGATGATGATCAGCCACCATGTAAGCTCAGGAAGCCTTGTAGAACAGAGTTAAAAGAGGATGATCAGTCACCACGTAAGCTTGGTAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGGAGGCCTCACAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCGTGGAAGACCCCCCAAGACCGAGGAACAAAAACATCTCATGATCCTGGCACATAATAGTAAAGGAAATGTGAGCCGTGAAGATGGTAAAAAAGTTGTAACTGTAACTGATAGTACAAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCAGTAAAAAGTTAAAAAAGAAAGGATTTTCTTCTGTAAGGAAAAATAAATTGCGAAAGGTTTTGAAAACTGAGAATGGTGGGATGGCATCAAATACTGTGAATGCACCTGTTGCTAAACAAAGTAAAAGGCGCGAAGAAAAGAAGTTGGTGAGGGATAAAATCATGGAATGTCTCTCGGATGCAGGATGGACTGTTGACCGCAGACCTAGAAATGGAAAAGTTTATCTTGATGCAGTATATGTTTCTCTGGACGGAAAGACACATTGGTCAATAACCTTGGCATACAAGAGGCTTAAAAAGCATTATGAAGCTGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCACAGGAAGATTTCAATTCACTAACTAGAGTAGTTACCAAGACCAGGATAGATAAAGTTAAATGTGTTCCATTTGGAGGAAAGGATGGAAAGAGAGTTGATGGAGTCAATCGAAAAAAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAGGGGTAAGTTAGTGAAAGGGAAAAAGAAAAGGAAGCGATCACTTCCTGAGGAGGGCAAAACAAATGTTACATCACCTAACAGGGATCGTAAACGGAACAAAACACAGAACAAGGCCAGATGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAGTTAATGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCTTGGATGATTGATCTGGGTACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAGGTCGGAAATTGCTTTCGAAGGTAAGATCACAGGAGATGGCATTCACTGTGGATGCTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAATCGGATCCTCTGAAAAATATATATACAGAGGAAGAAACTTCACTCCTACAATGCCTGCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGATCTGATCTGCTGTGATGGTTGCCCTTCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATTTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATAGAAGTTCAAACCAAACTGTCGTCAATGATGATTTTACTATGCCTGCACTGCGCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTATTGTGGCAAATGGTGAAAAGACCGATGATTCCAGGGTGGTAAATGGTGATAAAACCGATGATTCCAGGAATACATTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCAGATGTTGGCTTTGATGTTTCCCTGACAAAATCTCAGACGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACCAATCTGATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTAAACTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCATGGCAACCAACTTGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGTCGGCTTCTCAATGCCATCGAATGGGCACTCAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTGAAGAAACAAGCAAGCAAATAACAAAGAACATGAATCTGTTGGTATTTCCACATGTAGATATGTTACAGAAGAAGATATCAATGCATGAAATTGCTAATGAAAATTTGATTGCTACTGAAGTTTCTGACCATAAGAATCTTGCGACATACAAAGTAGCAATTCGGGATGGGGAAGACTCATCTGTATCTGATTGTTGCCCTAAAAACGAGAAAACCATATCTATTGACACCATACAGAATAGCATGTCTCCAAAAGACGGCAAATGTCATGCTGTATATGAGACTGTTCATGAAAAATTGGGCGTGGACCACAAAAGCACTGTAAATGCTGGTGAGGATGTCGCTAAGTCTTGTTGCCAAGTAGAGGATAAGGAAAGATACTGTCTGAGTACATCTTGTATTAACACTGAAACTTCACAAGAACATCACGTTGGTGCTATGTTGGAGGTTACTGAAAATTGTTCCAACGAGGTCAAAGTAACAGTTGATGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCCGCTGAAGAAAATATCCCTATTAACTCACATATTGAGTTTAGGACAAGGGGATCAAAATATTCTGCTGAAAGTAACCATGATTCACCCAAGATTTCTGATAGTTTTGAACTGAGATGTAAGACTAACTGTGCTCAACCGGGAGATCTTGCTGAATCTGTCAATGGTTGTGGCTCTAGACTAGATGGTGATAGTGCCACTGGTGAAGCAGGTCTCAAAACCAACATCTTGATGCATGTTGAATCAGAGAATACGACCAAAGATTTGCCTGCTAGTTGTGAAAACTATTCGAGTGCTGTTAGTGCGCCAAATGCTGATGAAGCTGAACTAGATTCCAAAACAATTGATCTCCAGACAAACAAAACTCTTGGAGATTGCCAATCTATTCTAGTATCTTCAGGTATTTGTGAGAAAATTGCATATGGTGTCAATGGGATGAATAAAGCATCCAGGGAAGCTGATGCTGATATTGAAGTAATTCTTGATGATAAGCCTGGTTCCCATTCTAGACCGAATGGTCATACAGCCTCAGGCGAAGCAGGTCTTACAACTAACACTTTGATGCATCTTGAGTCTCAGAATATCACCAAAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGTTGGTGCGCCAAGAATTGATCTCCAGACAAACAAAAATCCTGGAGATTGCGAATCCATATCAGTATCATCAGGTGTTTGTGACAAAATTGCAGATGGTATCAATGAGAGGAATGAAGCATCGAATGCAGATGATGTTCTTCCTGTTGATATTGAAGTGTTTCCCAATAATAAGCCTGGGATAAAGATGTCTTCAGAGCTAGCAGAACTTGATTTGCAGGTTGATCAAACTGATCTGAGTAACGCTAACATTGGTTCGGGTGCGGCTATGCACTGTATATCTACCAACAGTACTTCACGTGGTAGTACTGTAGGGACAGTTCCTGCAAACCAAGGCAGTTGA 4980 0.4127 MREGLRSRTRLGKGSGEGEVVHKKRVRVKNEVLVERTQAVVEALFSGDEGLVEPTSLIEKKGETEALVSGNEGLVEPTALIEKKGETEALVSGGDGLVEPTALIEKKGETEALVSGDEGLVEPTSLIEKKGEVEALFSGDEGLVEPTSSIEKNGETGALVSGDQSLVEPTSSIEKKGETGALVSGDQSLVEHTSSIEKKGEVEALVSCDEVLVEPTSSIEKKGEVECAGVVECAGEVECDVKTKFDFDLNLSLSVNVDIDENNIDENCNSSPRSCLKDGHSIAEADKKENEGLSGGRVLRSRLKRGDDRRAYAGNNGEHGRLEMIQVKNELEEVDEVLTDGKKNDRVSMNMGGKGKKKLKRKRGRPPKTEIKEKDQLDYQPPRKLGRPPKREIKEKDQLDDDQPPCKLRKPCRTELKEDDQSPRKLGRPRKTELKEDVQSPRKLGRPRKTELKEDVQSPRKLGRPHKTELKEDVQSPRKRGRPPKTEEQKHLMILAHNSKGNVSREDGKKVVTVTDSTSESEVDDTRSRRSSSKKLKKKGFSSVRKNKLRKVLKTENGGMASNTVNAPVAKQSKRREEKKLVRDKIMECLSDAGWTVDRRPRNGKVYLDAVYVSLDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISQEDFNSLTRVVTKTRIDKVKCVPFGGKDGKRVDGVNRKKKKIKPGSGAGRGKLVKGKKKRKRSLPEEGKTNVTSPNRDRKRNKTQNKARCALLVRDATEEVDSEVNGYVPYSGKRTVLAWMIDLGTILQNGKVHYMQDRSEIAFEGKITGDGIHCGCCNEIITISDFGAHAGSKSDPLKNIYTEEETSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPFGDWHCIYCCCKFCGLVDRSSNQTVVNDDFTMPALRTCHLCEEKFHISCIVANGEKTDDSRVVNGDKTDDSRNTFCGNKCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVGFDVSLTKSQTVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSVFGFEPLEETSKQITKNMNLLVFPHVDMLQKKISMHEIANENLIATEVSDHKNLATYKVAIRDGEDSSVSDCCPKNEKTISIDTIQNSMSPKDGKCHAVYETVHEKLGVDHKSTVNAGEDVAKSCCQVEDKERYCLSTSCINTETSQEHHVGAMLEVTENCSNEVKVTVDVGLNNNSDEKSAPSAEENIPINSHIEFRTRGSKYSAESNHDSPKISDSFELRCKTNCAQPGDLAESVNGCGSRLDGDSATGEAGLKTNILMHVESENTTKDLPASCENYSSAVSAPNADEAELDSKTIDLQTNKTLGDCQSILVSSGICEKIAYGVNGMNKASREADADIEVILDDKPGSHSRPNGHTASGEAGLTTNTLMHLESQNITKDLPVNCENNSSVVGAPRIDLQTNKNPGDCESISVSSGVCDKIADGINERNEASNADDVLPVDIEVFPNNKPGIKMSSELAELDLQVDQTDLSNANIGSGAAMHCISTNSTSRGSTVGTVPANQGS 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03021 1659 SMART PHD_3 876 917 IPR001965 -
Trre1g03021 1659 SMART PHD_3 918 988 IPR001965 -
Trre1g03021 1659 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g03021 1659 Pfam AT hook motif 477 488 IPR017956 GO:0003677
Trre1g03021 1659 Pfam AT hook motif 423 433 IPR017956 GO:0003677
Trre1g03021 1659 Pfam AT hook motif 441 451 IPR017956 GO:0003677
Trre1g03021 1659 Pfam AT hook motif 360 369 IPR017956 GO:0003677
Trre1g03021 1659 Pfam Tify domain binding domain 800 848 IPR032308 -
Trre1g03021 1659 ProSiteProfiles Zinc finger PHD-type profile. 874 919 IPR019787 -
Trre1g03021 1659 MobiDBLite consensus disorder prediction 366 494 - -
Trre1g03021 1659 MobiDBLite consensus disorder prediction 714 735 - -
Trre1g03021 1659 PANTHER PHD FINGER PROTEIN 12 535 1390 IPR042163 GO:0003714|GO:0045892
Trre1g03021 1659 MobiDBLite consensus disorder prediction 684 743 - -
Trre1g03021 1659 SUPERFAMILY FYVE/PHD zinc finger 865 918 IPR011011 -
Trre1g03021 1659 ProSitePatterns Zinc finger PHD-type signature. 877 916 IPR019786 -
Trre1g03021 1659 SMART AT_hook_2 423 435 IPR017956 GO:0003677
Trre1g03021 1659 SMART AT_hook_2 382 394 IPR017956 GO:0003677
Trre1g03021 1659 SMART AT_hook_2 477 489 IPR017956 GO:0003677
Trre1g03021 1659 SMART AT_hook_2 360 372 IPR017956 GO:0003677
Trre1g03021 1659 SMART AT_hook_2 459 471 IPR017956 GO:0003677
Trre1g03021 1659 SMART AT_hook_2 441 453 IPR017956 GO:0003677
Trre1g03021 1659 PRINTS AT-hook-like domain signature 475 485 IPR017956 GO:0003677
Trre1g03021 1659 PRINTS AT-hook-like domain signature 360 370 IPR017956 GO:0003677
Trre1g03021 1659 PRINTS AT-hook-like domain signature 380 391 IPR017956 GO:0003677
Trre1g03021 1659 MobiDBLite consensus disorder prediction 690 713 - -
Trre1g03021 1659 MobiDBLite consensus disorder prediction 532 547 - -
Trre1g03021 1659 CDD PHD1_AIRE 877 916 - -
Trre1g03021 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 866 958 IPR013083 -
Trre1g03021 1659 MobiDBLite consensus disorder prediction 340 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03021 Trre-Chr1 25933060 25942588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03021 436 1194 PHD Transcription Factor Family AT5G36670 41.199 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03021 - - tpra:123913713 2719.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03021 1 25933060 25942588 Trre1g03021 1 25933060 25942588 ECH