Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03020 ATGAGAGAAGGGTTGAGATCTCGGACTCGGTTGGGGAAGGGTTCTGGTGAAGGAGAAGTTGTTCACAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTGGAACGTGATGAGGGTTTAGTGGAGCCTACCTCATTGATTGAGAAGAAGGGCGTTGTTGAGTGCGCTGGTGAAGTTGAATGTGATGTGAAAACAAAATTTGATTTTGATTTAAACCTGAGTTTGAGTGTAAATGTTGACATAGATGAAAATAACATAGACGAGAATTGTAACAGTAGTCCTAGGAGTTGTTTAAAAGATGGGCATAGTATTGCGGAAGCTGATAAGAAGGAGAATGAAGGGTTGAGTGGGGGTCGAGTATTGCGGTCCAGGTTAAAGAGGGGAGATGACAGAAGAGCTTATGCAGGGAATAATGGAGAACATGGTCGATTGGAGATGATACAAGTCAAGAATGAGCTTGAAGAAGTTGATGAGGTTTTGACTGATGGTAAAAAGAATGATAGGGTTAGTATGAACATGGGAGGGAAGGGAAAGAAGAAATTGAAACGGAAGCGCGGGAGGCCTCCCAAGACAGAAATAAAAGAGAAAGATCAATTAGATTATCAGCCACCGCGTAAGCTTGGGAGGCCTCCGAAAAGAGAAATAAAAGAGAAAGATCAATTAGATGATGATCAGCCACCATGTAAGCTCAGGAAGCCTTGTAGAACAGAGTTAAAAGAGGATGATCAGTCACCACGTAAGCTTGGTAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGGAGGCCTCACAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCGTGGAAGACCCCCCAAGACCGAGGAACAAAAACATCTCATGATCCTGGCACATAATAGTAAAGGAAATGTGAGCCGTGAAGATGGTAAAAAAGTTGTAACTGTAACTGATAGTACAAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCAGTAAAAAGTTAAAAAAGAAAGGATTTTCTTCTGTAAGGAAAAATAAATTGCGAAAGGTTTTGAAAACTGAGAATGGTGGGATGGCATCAAATACTGTGAATGCACCTGTTGCTAAACAAAGTAAAAGGCGCGAAGAAAAGAAGTTGGTGAGGGATAAAATCATGGAATGTCTCTCGGATGCAGGATGGACTGTTGACCGCAGACCTAGAAATGGAAAAGTTTATCTTGATGCAGTATATGTTTCTCTGGACGGAAAGACACATTGGTCAATAACCTTGGCATACAAGAGGCTTAAAAAGCATTATGAAGCTGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCACAGGAAGATTTCAATTCACTAACTAGAGTAGTTACCAAGACCAGGATAGATAAAGTTAAATGTGTTCCATTTGGAGGAAAGGATGGAAAGAGAGTTGATGGAGTCAATCGAAAAAAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAGGGGTAAGTTAGTGAAAGGGAAAAAGAAAAGGAAGCGATCACTTCCTGAGGAGGGCAAAACAAATGTTACATCACCTAACAGGGATCGTAAACGGAACAAAACACAGAACAAGGCCAGATGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAGTTAATGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCTTGGATGATTGATCTGGGTACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAGGTCGGAAATTGCTTTCGAAGGTAAGATCACAGGAGATGGCATTCACTGTGGATGCTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAATCGGATCCTCTGAAAAATATATATACAGAGGAAGAAACTTCACTCCTACAATGCCTGCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGATCTGATCTGCTGTGATGGTTGCCCTTCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATTTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATAGAAGTTCAAACCAAACTGTCGTCAATGATGATTTTACTATGCCTGCACTGCGCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTATTGTGGCAAATGGTGAAAAGACCGATGATTCCAGGGTGGTAAATGGTGATAAAACCGATGATTCCAGGAATACATTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCAGATGTTGGCTTTGATGTTTCCCTGACAAAATCTCAGACGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACCAATCTGATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTAAACTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCATGGCAACCAACTTGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGTCGGCTTCTCAATGCCATCGAATGGGCACTCAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTGAAGAAACAAGCAAGCAAATAACAAAGAACATGAATCTGTTGGTATTTCCACATGTAGATATGTTACAGAAGAAGATATCAATGCATGAAATTGCTAATGAAAATTTGATTGCTACTGAAGTTTCTGACCATAAGAATCTTGCGACATACAAAGTAGCAATTCGGGATGGGGAAGACTCATCTGTATCTGATTGTTGCCCTAAAAACGAGAAAACCATATCTATTGACACCATACAGAATAGCATGTCTCCAAAAGACGGCAAATGTCATGCTGTATATGAGACTGTTCATGAAAAATTGGGCGTGGACCACAAAAGCACTGTAAATGCTGGTGAGGATGTCGCTAAGTCTTGTTGCCAAGTAGAGGATAAGGAAAGATACTGTCTGAGTACATCTTGTATTAACACTGAAACTTCACAAGAACATCACGTTGGTGCTATGTTGGAGGTTACTGAAAATTGTTCCAACGAGGTCAAAGTAACAGTTGATGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCCGCTGAAGAAAATATCCCTATTAACTCACATATTGAGTTTAGGACAAGGGGATCAAAATATTCTGCTGAAAGTAACCATGATTCACCCAAGATTTCTGATAGTTTTGAACTGAGATGTAAGACTAACTGTGCTCAACCGGGAGATCTTGCTGAATCTGTCAATGGTTGTGGCTCTAGACTAGATGGTGATAGTGCCACTGGTGAAGCAGGTCTCAAAACCAACATCTTGATGCATGTTGAATCAGAGAATACGACCAAAGATTTGCCTGCTAGTTGTGAAAACTATTCGAGTGCTGTTAGTGCGCCAAATGCTGATGAAGCTGAACTAGATTCCAAAACAATTGATCTCCAGACAAACAAAACTCTTGGAGATTGCCAATCTATTCTAGTATCTTCAGGTATTTGTGAGAAAATTGCATATGGTGTCAATGGGATGAATAAAGCATCCAGGGAAGCTGATGCTGATATTGAAGTAATTCTTGATGATAAGCCTGGTTCCCATTCTAGACCGAATGGTCATACAGCCTCAGGCGAAGCAGGTCTTACAACTAACACTTTGATGCATCTTGAGTCTCAGAATATCACCAAAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGTTGGTGCGCCAAGAATTGATCTCCAGACAAACAAAAATCCTGGAGATTGCGAATCCATATCAGTATCATCAGGTGTTTGTGACAAAATTGCAGATGGTATCAATGAGAGGAATGAAGCATCGAATGCAGATGATGTTCTTCCTGTTGATATTGAAGTGTTTCCCAATAATAAGCCTGGGATAAAGATGTCTTCAGAGCTAGCAGAACTTGATTTGCAGGTTGATCAAACTGATCTGAGTAACGCTAACATTGGTTCGGGTGCGGCTATGCACTGTATATCTACCAACAGTACTTCACGTGGTAGTACTGTAGGGACAGTTCCTGCAAACCAAGGCAGTTGA 4446 0.4078 MREGLRSRTRLGKGSGEGEVVHKKRVRVKNEVLVERDEGLVEPTSLIEKKGVVECAGEVECDVKTKFDFDLNLSLSVNVDIDENNIDENCNSSPRSCLKDGHSIAEADKKENEGLSGGRVLRSRLKRGDDRRAYAGNNGEHGRLEMIQVKNELEEVDEVLTDGKKNDRVSMNMGGKGKKKLKRKRGRPPKTEIKEKDQLDYQPPRKLGRPPKREIKEKDQLDDDQPPCKLRKPCRTELKEDDQSPRKLGRPRKTELKEDVQSPRKLGRPRKTELKEDVQSPRKLGRPHKTELKEDVQSPRKRGRPPKTEEQKHLMILAHNSKGNVSREDGKKVVTVTDSTSESEVDDTRSRRSSSKKLKKKGFSSVRKNKLRKVLKTENGGMASNTVNAPVAKQSKRREEKKLVRDKIMECLSDAGWTVDRRPRNGKVYLDAVYVSLDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISQEDFNSLTRVVTKTRIDKVKCVPFGGKDGKRVDGVNRKKKKIKPGSGAGRGKLVKGKKKRKRSLPEEGKTNVTSPNRDRKRNKTQNKARCALLVRDATEEVDSEVNGYVPYSGKRTVLAWMIDLGTILQNGKVHYMQDRSEIAFEGKITGDGIHCGCCNEIITISDFGAHAGSKSDPLKNIYTEEETSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPFGDWHCIYCCCKFCGLVDRSSNQTVVNDDFTMPALRTCHLCEEKFHISCIVANGEKTDDSRVVNGDKTDDSRNTFCGNKCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVGFDVSLTKSQTVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSVFGFEPLEETSKQITKNMNLLVFPHVDMLQKKISMHEIANENLIATEVSDHKNLATYKVAIRDGEDSSVSDCCPKNEKTISIDTIQNSMSPKDGKCHAVYETVHEKLGVDHKSTVNAGEDVAKSCCQVEDKERYCLSTSCINTETSQEHHVGAMLEVTENCSNEVKVTVDVGLNNNSDEKSAPSAEENIPINSHIEFRTRGSKYSAESNHDSPKISDSFELRCKTNCAQPGDLAESVNGCGSRLDGDSATGEAGLKTNILMHVESENTTKDLPASCENYSSAVSAPNADEAELDSKTIDLQTNKTLGDCQSILVSSGICEKIAYGVNGMNKASREADADIEVILDDKPGSHSRPNGHTASGEAGLTTNTLMHLESQNITKDLPVNCENNSSVVGAPRIDLQTNKNPGDCESISVSSGVCDKIADGINERNEASNADDVLPVDIEVFPNNKPGIKMSSELAELDLQVDQTDLSNANIGSGAAMHCISTNSTSRGSTVGTVPANQGS 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03020 1481 PRINTS AT-hook-like domain signature 202 213 IPR017956 GO:0003677
Trre1g03020 1481 PRINTS AT-hook-like domain signature 297 307 IPR017956 GO:0003677
Trre1g03020 1481 PRINTS AT-hook-like domain signature 182 192 IPR017956 GO:0003677
Trre1g03020 1481 Pfam Tify domain binding domain 622 670 IPR032308 -
Trre1g03020 1481 SMART PHD_3 740 810 IPR001965 -
Trre1g03020 1481 SMART PHD_3 698 739 IPR001965 -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 188 316 - -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 536 557 - -
Trre1g03020 1481 Pfam AT hook motif 263 273 IPR017956 GO:0003677
Trre1g03020 1481 Pfam AT hook motif 182 191 IPR017956 GO:0003677
Trre1g03020 1481 Pfam AT hook motif 245 255 IPR017956 GO:0003677
Trre1g03020 1481 Pfam AT hook motif 299 310 IPR017956 GO:0003677
Trre1g03020 1481 ProSiteProfiles Zinc finger PHD-type profile. 696 741 IPR019787 -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 161 369 - -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 354 369 - -
Trre1g03020 1481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 688 762 IPR013083 -
Trre1g03020 1481 CDD PHD1_AIRE 699 738 - -
Trre1g03020 1481 SMART AT_hook_2 245 257 IPR017956 GO:0003677
Trre1g03020 1481 SMART AT_hook_2 299 311 IPR017956 GO:0003677
Trre1g03020 1481 SMART AT_hook_2 281 293 IPR017956 GO:0003677
Trre1g03020 1481 SMART AT_hook_2 263 275 IPR017956 GO:0003677
Trre1g03020 1481 SMART AT_hook_2 204 216 IPR017956 GO:0003677
Trre1g03020 1481 SMART AT_hook_2 182 194 IPR017956 GO:0003677
Trre1g03020 1481 ProSitePatterns Zinc finger PHD-type signature. 699 738 IPR019786 -
Trre1g03020 1481 SUPERFAMILY FYVE/PHD zinc finger 687 740 IPR011011 -
Trre1g03020 1481 MobiDBLite consensus disorder prediction 506 565 - -
Trre1g03020 1481 PANTHER PHD FINGER PROTEIN 12 383 1213 IPR042163 GO:0003714|GO:0045892
Trre1g03020 1481 MobiDBLite consensus disorder prediction 512 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03020 Trre-Chr1 25933060 25942588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03020 258 1016 PHD Transcription Factor Family AT5G36670 41.074 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03020 - - tpra:123913713 2422.12