Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02990 ATGGGTAACGTAGACTATGATTACACTAGTTCGGGAATGAACAAAGTTGATGAGAATCATGTACAACGTGTGGAAATTCCACCTCCTCAACCATTTTTGAAGTCTTTGAAATATTCAATGAAAGAGACTTTTTTTCCAGATGATCCTTTGAGGAGGTTTAAGAATCAACCAGCTTCCAAAAAATTTGTGCTTGGTCTTCAATATTTCTTCCCTATATTTGAATGGGCACCAAGATACACTTTTCAGTTCTTGAAATCTGATCTCATAGCTGGCATCACTATTGCTAGTTTGGCTATTCCTCAAGGCATTAGCTATGCTAAACTTGCCAACCTCCCCCCAATTCTTGGACTATATTCGAGCTTTATACCACCTTTGATTTATGCAATGATGGGTAGTTCAAGGGATTTGGCAGTTGGAACAGTGGCAGTTGGATCTCTTTTGATGGGTTCCATGTTAGGCAATGAGGTTAATCCCAATCAAAACCCAAAGCTTTTTCTCCACCTTGCTTTCACAGCTACATTCTTTGCCGGGGTTTTGCAAGCTTCATTGGGTCTCTTTAGGTTAGGGTTTATCGTGGATTTCCTATCACATGCAGCTATAGTAGGATTCATGGGAGGAGCAGCCACAGTGGTGTGTCTGCAGCAGCTGAAATCAATTCTAGGACTTGAACATTTCACCCATGCTGCTGATCTTGTATCAGTCTTGCGCTCTGTTTTTACCCAAACTCATCAGTGGAGGTGGGAAAGCGCAGTGTTGGGATTTTGCTTCATTTTCTTTCTCCTTGTCACAAGATACTTCAGTAAAAAACAACCAAAATTCTTTTGGGTGTCAGCAATGACGCCGTTGGCGTCTGTTATACTCGGAAGTGTGCTGGTTTATTTCACTCACGCAGAGAACCACGGCGTTCAAGTGATAGGAGAATTGAAAAAAGGACTTAATCCACCATCACTCACAGAATTGGTATTTGTGTCACCATATATGACCACAGCTATCAAAACTGGCCTTATTGTTGGCATTATTGCTCTTGCAGAAGGAATAGCTGTAGGAAGAAGCTTTGCAATGTATAAAAATTACAATATTGATGGAAACAAAGAGATGATAGCTATTGGAACCATGAACATAGTTGGTTCATTCACATCTTGCTACCTTACAACAGGGCCATTTTCGCGTTCGGCTGTGAACTATAATGCTGGATGCAAGACTGCAGTATCCAACATAGTGATGTCAATTGCAGTTATGTTGACACTGTTGTTTTTGACACCTTTGTTCTATTACACTCCTCTGGTGGTACTATCAGCCATAATTGTATCTGCAATGCTTGGCCTTATAGATTACGAAGCAGCCATCCATCTTTGGAAGATTGATAAATTTGATTTTGTCGTCTGCATTAGCGCATATATCGGTGTTGTTTTCGGCAGTGTTGAAATTGGCTTAGTCATAGCAGTTGCGATATCGGTACTTCGGTTACTGCTATTTGTTGCAAGACCAAGGACATTTGTTTTGGGAAACATTCCAAACTCTATAATTTACAGAAACATTGAGCATTATCCGAATGCAAATCGTGTTTCCGGAATCCTAATTCTAAAGATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGGATCTCAAGGTGGATTGATGAAGAGGAAGACAGAATTAAATCCACAGGGGAAACAAGTTTGAAGTATATTATAATGGATATGAGTGCTGTTGGGAATATTGATACAAGTGGAATAAGCATGCTTGAAGAGACTAAGAAGATTGCTGAAAGAAGAGAGCAACAAATTGTTTTGGTCAATCCTGGAAGTGAGGTGATGAAGAAACTAAACAAATCTAACTTCCAAAAGGACACAGGTGGAAATTGGATTTATCTGACAGTTGAAGAGGCTGTTAGAGCATGTAACTTTGTGCTTCATTCAAGCAAAACAAATCCCAAAAGAGATGAATCAGAGGGTTGGGACAATGTTTGA 1983 0.3974 MGNVDYDYTSSGMNKVDENHVQRVEIPPPQPFLKSLKYSMKETFFPDDPLRRFKNQPASKKFVLGLQYFFPIFEWAPRYTFQFLKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLGNEVNPNQNPKLFLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKSILGLEHFTHAADLVSVLRSVFTQTHQWRWESAVLGFCFIFFLLVTRYFSKKQPKFFWVSAMTPLASVILGSVLVYFTHAENHGVQVIGELKKGLNPPSLTELVFVSPYMTTAIKTGLIVGIIALAEGIAVGRSFAMYKNYNIDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAVSNIVMSIAVMLTLLFLTPLFYYTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFVVCISAYIGVVFGSVEIGLVIAVAISVLRLLLFVARPRTFVLGNIPNSIIYRNIEHYPNANRVSGILILKIDAPIYFANASYLRERISRWIDEEEDRIKSTGETSLKYIIMDMSAVGNIDTSGISMLEETKKIAERREQQIVLVNPGSEVMKKLNKSNFQKDTGGNWIYLTVEEAVRACNFVLHSSKTNPKRDESEGWDNV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02990 660 Gene3D STAS domain 495 640 IPR036513 -
Trre1g02990 660 SUPERFAMILY SpoIIaa-like 518 638 IPR036513 -
Trre1g02990 660 PANTHER SULFATE TRANSPORTER 34 641 IPR001902 GO:0016020|GO:0055085
Trre1g02990 660 Pfam STAS domain 516 634 IPR002645 -
Trre1g02990 660 ProSiteProfiles STAS domain profile. 515 638 IPR002645 -
Trre1g02990 660 Pfam Sulfate permease family 84 464 IPR011547 GO:0016020
Trre1g02990 660 FunFam Sulfate transporter 31 495 641 - -
Trre1g02990 660 NCBIfam sulfate permease 71 634 IPR001902 GO:0016020|GO:0055085
Trre1g02990 660 CDD STAS_SulP_like_sulfate_transporter 516 631 - -
Trre1g02990 660 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02990 Trre-Chr1 25604675 25613451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02990 13 653 Inorganic Solute Cotransporters AT4G02700 69.782 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02990 K17471 - gmx:100810196 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02990 1 25604675 25613451 Trre1g02990 1 25604675 25613451 ECH
Trre13g03851 13 46654652 46663427 Trre1g02990 1 25604675 25613451 PCT