Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02987 ATGGAACAATATGAAGTTCTAGAACAGATTGGCAAGGGTTCTTTTGCTTCTGCTCTACTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTGAAGAAGATCCGCCTTGCCCGCCAGACCGAAAGAATCCGTAGATCTGCTCACCAGGAGATGGAACTTATATCTAAAGTTCGTAATCCATTCATTGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTGTGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATTGTATTCATTTTTCAGAAGAGCGGCTTTGCAAATGGCTAGTTCAACTCTTGATAGCACTTGACTACTTGCACGGAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTAACAAAAGATCAAGATATTCGTCTTGGTGACTTTGGTCTTGCTAAAATGTTGACAAGCGATGATCTTGCTTCTTCGATTGTGGGGACTCCAAGTCATATGTGCCCAGAGCTTCTTGCCGATATACCCTACGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCGGCACACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTTTAGTTGCTCCGCTGCCAACAATGTATTCTGGCACTTTTCGAGGCATGGTAAAGAGTATGCTTCGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAGCTACTAAATCATCCGCATCTTCAACCTTATATACTTAAAGTTCATTTGAAACTAAATAATCCTAGAAGAAGTACTTTTCCATTCCGATGGACAGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAACCGGAATCTGTTTCCACTTTCTCTGGCAGAGTTAAACGATTGTCATTCAGTAATGATAGGGCGTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTTTGTTCTACTCAAAGAGCACAAGGATTCTCTTCTACTTGTTCAAAACATTATGAACTATCCATTGGTTGTGTCCGTGAAGAACACAATGATGACAAATCAGAAGGCACCAAACTATCAATTGTTGATCGGATGCAAAGACTGAGAGCAGCTAATGAGTCTGCCACCCCTCGAAGACAGACAACACCATCAAAGATAGCCCATACTATTTCCAAGCGCGATTCACTTCCAGCATCTTCTACTCCAGCTGGTAAATTTACACCACCGTCTCGCAGAGCATCCCTTCCCCTTCCTACAAGATCCAAGGCCACAACTACCCCTTACAGAACCAATGTTGGTGTTCTTCGAAGTGTAGACTCTCCTAACATTTCTGTTAATGCGCCACGGATTGACAAGATGGCCGAGTTTTCTTTGGCCCCTGGTGAGGATCATCCTCTCTTCCCTGTGCGCGGAACATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGAAGTGTTGTTGCTGCTACTGACTACTCAATAACAAAAGACAAGTGTACAATCCAGGTTGTGGACAAATCCAATGTCCCTTCCAGTGGTGCACTAGTTTCATATGGCAATGAATGCTCCCAACATGTGGCAACTGCCGTTTCAAATCATTCCTCCGCTAATTCTCATCAGCGTAAGTTTGACACCACATCTTACCAGCAACGAGCGGAGGCATTGGAAGGACTGCTCGAGTTCAGTGCTCGGCTCCTACAGCAACAAAGGTTTGAAGAGCTTGAGGTGTTGTTGAAGCCATTCGGACCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACTAGGAGCTTTAAAGAAACTGTGGTTTAA 1839 0.4285 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTERIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCIHFSEERLCKWLVQLLIALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSHMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFRWTDSNHARRSRFVEPESVSTFSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSSTCSKHYELSIGCVREEHNDDKSEGTKLSIVDRMQRLRAANESATPRRQTTPSKIAHTISKRDSLPASSTPAGKFTPPSRRASLPLPTRSKATTTPYRTNVGVLRSVDSPNISVNAPRIDKMAEFSLAPGEDHPLFPVRGTSSTSAQCSSSSPRSVVAATDYSITKDKCTIQVVDKSNVPSSGALVSYGNECSQHVATAVSNHSSANSHQRKFDTTSYQQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTRSFKETVV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02987 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trre1g02987 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre1g02987 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02987 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02987 612 MobiDBLite consensus disorder prediction 380 414 - -
Trre1g02987 612 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Trre1g02987 612 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Trre1g02987 612 SUPERFAMILY Protein kinase-like (PK-like) 1 317 IPR011009 -
Trre1g02987 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 568 - -
Trre1g02987 612 CDD STKc_Nek 3 258 - -
Trre1g02987 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre1g02987 612 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Trre1g02987 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02987 612 MobiDBLite consensus disorder prediction 377 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02987 Trre-Chr1 25542362 25546175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02987 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 8.60e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre1g02987 Pkinase 3.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02987 K08857 - gmx:100810347 991.104