Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02981 ATGATTAGAAACATTTCATCACAGAACCTATTCTTCGCGTTAGGGTTTCTTCTTTCAACCACAACAATCCCTTTCGCTTACAGCGAATCATCCACATGCTTAACCGTTTACAAAAACGGCGGCGCTCCGGCGGTGTTCAAATCTCCAAAATGCCCTCGCTGGAACCTCTTCGACTACAATTCTCATCCTCAATCAACTACGCGTTGCCAATCTGCAAAACTTCAAGGTCGAAGAAAATCACAAGAGGATCGCACTCTCTGTGTTCTCGATGTTCACATTCCATTCCCCGGTGCGATGGGGATCAAGGATGTTGTGGTTGGAATTGTGGCGGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCGAAACTTTTGATGGAGTATTTTGTTCTGCATACTTATTTTCTTCTTGATGCTACATATTCGTTTATATTCGAGGCTTCCACAGGAACATTGCTTTACAGGAGTGATCATGATCATGTAAACCTACTGCATAGATGGAAAGAGATTTTAGGTTGGCAATGGCATGAACTGCATTCTGAAAGGTTGCAGAATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTGTTGAGAGCAATCCATGATATTGATGCGAAGTTTTCTGAGGAAGCCTCTAGAAATAACCTTCATTCAGGATCTACAGCAACAATTGTATTGGTTGCAGATGATAAAATTCTGGTTGCCAATATTGGAGACTCTAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCTCCTAAGGAGGCTAAAGCCTCTTTATTAAAGCTATATAGGCAGACAGAGCGTGATGGTTCTGTTTCTGTGTGGAATCGTGAAAAGTACAAATTAGCATCTTCCCATGGGTTCACTCATTTTGCAGTGGAGGAATTGACTAGCGATCATCATCCAGACAGAGAGGATGAAAAAACTCGGGTGGAAGCTGCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTGCCTCGCGTAAATGGTCAGTTGGCTATTACACGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGAGTTATATCTGTACCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTTAGTGACATGAGATCAGAATGCACCTCTTCATCTTCCTATTCATTAGCAGATTTTATTATTAATACTGCCTTAAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCTGCTAAATCTTCTGCGAACTCACTTAGAAGAAGCTATACTGAAAATGAGGATGCAGGCTTCCCATTATTTGGGCTGCAGGAATCAGCTTACAGAAGCTCAGCTAATGATATCACCTCTGATCTATTGCACCTGGAGCACCCTCATCTGCTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATGACTCAGTGGATTCTAAGTGGCCTCCCAAAAAAGATGACCGGGAAGACTATTTGTATGAACTACCCCAGCCTCTACCAGATACCCTTCATCAACAACCTGCAGTAGATGGCCCTGTAATTTTGTACAATGACCAAAACTTTTGCTTTCACCTAAGTTCAACTATCAATCAAGCCAAAGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCAATTCCTTTAATTGATGCTGGTTCAGATAATGAGTCTTCTGATTATTCGATGCCTGATTCAAGGTATGTATTAAGGAGGAGTTTTGGTCGTGGATCATATGGCGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAAGGTAATATTACTTCAGAAATGGGCAAGGATGACAATAATAGAAACGGCAGCTCAAGTAATCCTGAGTGTCAGGATGGTCCTTCTAACTACACCATGTACATTTTGAAACGTATAATGGTAGAGAAAGGGTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAATATTTTGGAGAAATTTTCTTAAATGGTTCTGAGTATTCATTGCAAAACAAATTTAGACTGGAAGGAGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCGGTCCAATGAAATATGGCTTGTATTCAGTTATGAGGGAGTGTCATTGTCAAAGCTTTTATATACCGTAGAAGATGCAAATAGTACTGCTGAGAAAGAAAGACTCGAGCAAGTGAAACAGGTTCGGATACTACGCCCATCAAAATGGTGGCGTTGGTTGAAAACGACGGAAGAAGGGCAAGAGGAAATGCGCAAGCTTATCTGGCAACTGTTATTGGCACTCAAGTCTTGTCACGACCGCAATATCACACACAGAGACATTAAACCCGAGAATATGGTGATATGCTTTGAAGATCCGGAGTCAGGGAGATGCTTGAAAGATACTCCAACAAAAGTTAATAATTTTTCCACCAAAATGCGCATTATTGACTTCGGAAGTGGAATTGATGAATTCACAATAAAGCACTTATATGCTTCTACTGGGCCTTCTAGAGCTGAACAAACTTACGACTACACACCTCCTGAAGCTTTGCTAAATGCTACGTGGTATCAAGGGCCAACAAGCACGACTTTGAAGTATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAAATGGTCTTAGGGACACCAAATATTTTCCAGATAAATGCGTTAACGCGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTGGCATACAGACTTAGATCGTTCATGGAATTGTGCATCTTAATCCCTGGGGTTTCTGGCAACTCAAAAAAGTATCACAAAGTGAATCAAGTTGGTGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTAGACAAATTAAAGCTAGAGATCCTCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTGGTGCGCCATCTACTACTATGGGACCCAGAGGATCGGCCAAGTGTTGACGAGGCACTTCGGCATCCCTATTTCCAACCTCCACCAAGAGGATAA 3156 0.4138 MIRNISSQNLFFALGFLLSTTTIPFAYSESSTCLTVYKNGGAPAVFKSPKCPRWNLFDYNSHPQSTTRCQSAKLQGRRKSQEDRTLCVLDVHIPFPGAMGIKDVVVGIVAVFDGHNGAEASEMASKLLMEYFVLHTYFLLDATYSFIFEASTGTLLYRSDHDHVNLLHRWKEILGWQWHELHSERLQNTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAFLCSEKFQSPKEAKASLLKLYRQTERDGSVSVWNREKYKLASSHGFTHFAVEELTSDHHPDREDEKTRVEAAGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRFSDMRSECTSSSSYSLADFIINTALKKGSMDNMAAVVVPLESAKSSANSLRRSYTENEDAGFPLFGLQESAYRSSANDITSDLLHLEHPHLLDTKFKRILVEVKHGDFGCFYLSENLDDSVDSKWPPKKDDREDYLYELPQPLPDTLHQQPAVDGPVILYNDQNFCFHLSSTINQAKDQCINPEGFASFIGLLESIPLIDAGSDNESSDYSMPDSRYVLRRSFGRGSYGEVWLAFHWNCNQGNITSEMGKDDNNRNGSSSNPECQDGPSNYTMYILKRIMVEKGSAVYLSGLREKYFGEIFLNGSEYSLQNKFRLEGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTVEDANSTAEKERLEQVKQVRILRPSKWWRWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDPESGRCLKDTPTKVNNFSTKMRIIDFGSGIDEFTIKHLYASTGPSRAEQTYDYTPPEALLNATWYQGPTSTTLKYDMWSVGVVMLEMVLGTPNIFQINALTRALLDRHLEGWNEGVKELAYRLRSFMELCILIPGVSGNSKKYHKVNQVGVSPASWKCSEEFFSRQIKARDPLKIGFSNIWALRLVRHLLLWDPEDRPSVDEALRHPYFQPPPRG 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02981 1051 Gene3D - 62 450 IPR036457 -
Trre1g02981 1051 ProSiteProfiles Protein kinase domain profile. 619 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02981 1051 ProSiteProfiles PPM-type phosphatase domain profile. 68 442 IPR001932 -
Trre1g02981 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Trre1g02981 1051 Pfam Protein kinase domain 796 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02981 1051 MobiDBLite consensus disorder prediction 648 668 - -
Trre1g02981 1051 SMART serkin_6 619 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02981 1051 SMART PP2C_4 60 440 IPR001932 -
Trre1g02981 1051 Gene3D Transferase(Phosphotransferase) domain 1 786 1046 - -
Trre1g02981 1051 PANTHER PROTEIN PHOSPHATASE 64 441 IPR015655 GO:0004722|GO:0006470
Trre1g02981 1051 FunFam uncharacterized protein LOC106771884 isoform X8 786 1046 - -
Trre1g02981 1051 CDD PP2Cc 68 442 IPR001932 -
Trre1g02981 1051 Pfam Protein phosphatase 2C 159 435 IPR001932 -
Trre1g02981 1051 SUPERFAMILY Protein kinase-like (PK-like) 614 1047 IPR011009 -
Trre1g02981 1051 SUPERFAMILY PP2C-like 62 443 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02981 Trre-Chr1 25444558 25457812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02981 683 1049 PP2C-type Phosphatase Gene Family AT3G63340 67.368 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Trre1g02981 Pkinase 2.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02981 - - gmx:100781476 1741.47