Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02980 ATGAATTATATTTACTCAGTGAAGGAAGAAAACATAGAACCATTATGTGAATATCAACCAACGATTCCACCACCTCAACCAATTGAAGGACTTCATGAAACTAGACCCCAACCATTTCTCACTAAAACATTTGATGTAGTGAATGACCAAAGTACCAACCATGTTGTTTCATGGAACAGAGATGGCACCAGTTTTGTGGTTTGGGATACACATGCTTTCTCTAATGATCTCCTTCCCAGATTCTTCAAACATAATAATTTCTCAAGCTTTGTGAGACAACTACACACTTATGGTTTTAGAAAAATAGATCCAAATAGATGGGAGTTTGCAAATGAAGGATTCCTAAGAGAACACAGACATCTATTAAGGAACATAAGGCGAAAGAAGGGACCTTCTCACCCTATTCCTAATTCTCAACAAGGACAAGGTTGTTTTGAACTAGATGCGGAAATTGATCATTTAAGGCGTGAAAAACAAGTATTGATGATGGAGCTTATGAGTCTTAGACAGAAGCAATATAATACCACATTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGATAGAAATCAATCAGAAACAAATGATGGCATTCTTAGCTAGAGCTCTGAAAAAACCTGGCTTTATCCACCAACTACTACAACAAAAATTGGAGAAAAATGAGCTTGAAGAAGCCATGAACATGACCAAGAAGAGAAAGCTTGTTGAACAAGGAACTAGACTAGGTATTGGACAATCAAGTAGTGTTAAAGTTGAGCCTTTAGAATTAGGTGATTGTGAATTCGAAGGGTCAGAGTTGGAAATGCAGGTTTTTGAAAGGGGGGAGATGGGGGCACTAGAATCACAAGAAAGAATAGAAAGATTACTTGGAGATGAAGGGTTCTGGGAAGAACTAATGTTTAGTTTCAAATTTGAGGGTAGATTTGACATTCCAACAGCTGAAGATAATGATGAGAATCAAGACGATTCAAGTGAACCACTAAATCAACAATTCGGGATTAACTCTTTTCATTCAGTTCACTAG 1026 0.3733 MNYIYSVKEENIEPLCEYQPTIPPPQPIEGLHETRPQPFLTKTFDVVNDQSTNHVVSWNRDGTSFVVWDTHAFSNDLLPRFFKHNNFSSFVRQLHTYGFRKIDPNRWEFANEGFLREHRHLLRNIRRKKGPSHPIPNSQQGQGCFELDAEIDHLRREKQVLMMELMSLRQKQYNTTLYLLEMEQRLQGIEINQKQMMAFLARALKKPGFIHQLLQQKLEKNELEEAMNMTKKRKLVEQGTRLGIGQSSSVKVEPLELGDCEFEGSELEMQVFERGEMGALESQERIERLLGDEGFWEELMFSFKFEGRFDIPTAEDNDENQDDSSEPLNQQFGINSFHSVH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02980 341 Coils Coil 151 171 - -
Trre1g02980 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 241 IPR027725 -
Trre1g02980 341 MobiDBLite consensus disorder prediction 324 341 - -
Trre1g02980 341 Gene3D - 31 129 IPR036388 -
Trre1g02980 341 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 MobiDBLite consensus disorder prediction 312 341 - -
Trre1g02980 341 FunFam Heat shock transcription factor 1 32 129 - -
Trre1g02980 341 Coils Coil 213 233 - -
Trre1g02980 341 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g02980 341 SUPERFAMILY "Winged helix" DNA-binding domain 36 128 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02980 Trre-Chr1 25440735 25443757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02980 21 307 HSF AT3G22830 45.029 1.07e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre1g02980 HSF_DNA-bind 6.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02980 K09419 - gmx:100811945 380.948