Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02975 ATGTTCCCTGCACTTATGTCCAATTCCACTTCTTTCTCTAAAGAAACTACTCTATCTTCTAATACATTTGGTAGATTAAACCACATAGTTTCAACCATAAATTCTTCACAACAACCTCAAAAGACCAAGAAAAAAAGAAACCTCCCTGGGCACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTAAAGCAAAGAAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAACCTTCATGTGTTCATCATAACCCTTCTAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATTCTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGATTTATGCTGTTCACTCTGATTGGAAAGCTCACTCCAAAACTTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCATTTTTTCCAGGAAGGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAATACCCAATCTCTCTTCCTTTTCCCAAATCAACAAAGCCAAATCACATGGGACCCACCACAACAAAACCCTAATCATAATACTCTTACATCATCCCTACTGCACCACAACATGATCAAGCCTGAATCACATCAAAACTTTCACAACAACAACAACCTATCTTCTTCTCCTCTTCCCTCATTTCTTCATGATCACCCCAACAACCCTAATTATAAGACCAATATCATGATGACATCATCACCCTTCCATGTCAGCACACAACAGCCTTCCTCCACTTCCGCCACGTCACCACACCTCTCAGCAACTGCACTTCTCCAGAAAGCTGCCACCGTCAGAGCCACCACCATCACAGGTAGCCAACCCGTTCATTTGCCACGTCAGCTTAGCATGAGCGAGTTTGGATCAGTTGATCACTACATTAACAACATAAGAGGAGGCCGGAACCTTAAGAACGACGATCTTACGAGGGATTTTCTTGGCCTTACGAACGGTGGAGGAAATGGTGGTTCTATCGATGTTAGCATCGACGTGAAGGATATGCTAACATTCACAGGAGGTGTAGAGTATCACGGCAACCAACCTCACGAAAACATGACGATGTTCAAGCAGCAGTCACAACAAGGTTTTGGTTTTCTTGGGACAACAGCAACTATTCCCGAGTCATGGGGGAATTGTTAG 1305 0.4169 MFPALMSNSTSFSKETTLSSNTFGRLNHIVSTINSSQQPQKTKKKRNLPGHPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARMSANTQSLFLFPNQQSQITWDPPQQNPNHNTLTSSLLHHNMIKPESHQNFHNNNNLSSSPLPSFLHDHPNNPNYKTNIMMTSSPFHVSTQQPSSTSATSPHLSATALLQKAATVRATTITGSQPVHLPRQLSMSEFGSVDHYINNIRGGRNLKNDDLTRDFLGLTNGGGNGGSIDVSIDVKDMLTFTGGVEYHGNQPHENMTMFKQQSQQGFGFLGTTATIPESWGNC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02975 434 MobiDBLite consensus disorder prediction 32 55 - -
Trre1g02975 434 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre1g02975 434 FunFam protein indeterminate-domain 12-like 51 120 - -
Trre1g02975 434 Gene3D Classic Zinc Finger 126 207 - -
Trre1g02975 434 SMART c2h2final6 72 94 IPR013087 -
Trre1g02975 434 SMART c2h2final6 149 169 IPR013087 -
Trre1g02975 434 SMART c2h2final6 114 144 IPR013087 -
Trre1g02975 434 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Trre1g02975 434 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Trre1g02975 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre1g02975 434 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Trre1g02975 434 Gene3D Classic Zinc Finger 52 121 - -
Trre1g02975 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 397 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02975 Trre-Chr1 25392386 25396249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02975 7 398 IDZ Gene Family AT4G02670 49.272 4.01e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02975 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02975 K25870 - gmx:100780056 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02975 1 25392386 25396249 Trre1g02975 1 25392386 25396249 ECH