Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02968 ATGCCTCTCTCTTCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAACCCGGGGCAAGGTGGAAAGCTGGTCCGAGCGGCCGGAACCAATGCAAAGATCTTGAAAGAGCCCACATCACAGTACTGTTTAATTCAACTCCCCTCTGGTGTTAAAAAATTGATTGATTCTCGATGCAGGGCCACTGTCGGTACTGTCTCTAATCCAACTCATGGTGATCGTAAGCTTAGGAAGGCTGGCCATAGCAGATGGCTTGGTCGGAGACCGGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTGGGTGGGGGAAAGGATCCCGTACTCCTTGGGGTAAGCCAACTAAGGGTGGCTTCAAGACTGGACCTCTTAAACGGAAAAAGTAG 429 0.5012 MPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSQYCLIQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSRTPWGKPTKGGFKTGPLKRKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02968 142 PANTHER RIBOSOMAL PROTEIN L2 1 139 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre1g02968 142 SUPERFAMILY Translation proteins SH3-like domain 1 132 IPR008991 -
Trre1g02968 142 Gene3D - 1 68 IPR014722 -
Trre1g02968 142 SMART Ribosomal_L2_C_2 1 128 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre1g02968 142 Gene3D Ribosomal protein L2, domain 3 69 142 IPR014726 -
Trre1g02968 142 FunFam 60S ribosomal protein L2, mitochondrial 1 67 - -
Trre1g02968 142 Pfam Ribosomal Proteins L2, C-terminal domain 1 126 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre1g02968 142 FunFam 50S ribosomal protein L2 68 142 - -
Trre1g02968 142 MobiDBLite consensus disorder prediction 96 142 - -
Trre1g02968 142 ProSitePatterns Ribosomal protein L2 signature. 90 101 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02968 Trre-Chr1 25329157 25329585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02968 1 107 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 45.133 1.17e-22 88.2