LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g02960	ATGGAAGTTGTTGATGAGAATAGAGAACTTATTATTGAAGACAAAGAGTATGTTGTTGATTCACATGCTAACGATGATTTACATGTCAATGATTCAAATGTTGATGGAAATCAAGAACCATACATTGGAATGGAATTTGAGTCACAAGAAAATGCTTATTCATTCTATGCTCACTATGCAAAATGTATCGGGTTTGGGATTTCAATTAAAACTAGTCGTCGTTCAAGGGTTTTTAGAGAATTTATTGATGTAAAGTATGCTTGCACAAGGTATGGAAAAAAGCGAGAATCCACTGCAATTAACCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTTACTTACGTATAAAAAGAAAGTCGGATGGGAAATGGATTGTCCACGACTTCATTAAAGAGCACAATCATGAGTTTTTTCCAGCATATGCACATTATTTTCCCTGTCATAGACGGATCAATACAGCTCAAAAGAACTATATTGAAACTTTGCAAAATGTCAGAGTGAGAACAACCAAAATTTATGCAACAATGGCCAAACAACATGGAGCCTTGAAACAATGTGCCACTATTAATCAATCTTTGAAAATTGACAAGGAAAATATTGGTAAGAACAAATTGGGTGATACACCACTACTTGATCCTCGACCATCAAAAACAAAAGGGGCTCCATCACAGAGAATGAAAAGTGGGATCGAAAAAGGGCGTAAGAGACGTAAAAAGGAAAACTGA	726	0.3609	MEVVDENRELIIEDKEYVVDSHANDDLHVNDSNVDGNQEPYIGMEFESQENAYSFYAHYAKCIGFGISIKTSRRSRVFREFIDVKYACTRYGKKRESTAINPRPCLKVECEAYLRIKRKSDGKWIVHDFIKEHNHEFFPAYAHYFPCHRRINTAQKNYIETLQNVRVRTTKIYATMAKQHGALKQCATINQSLKIDKENIGKNKLGDTPLLDPRPSKTKGAPSQRMKSGIEKGRKRRKKEN	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g02960	241	MobiDBLite	consensus disorder prediction	201	241	-	-
	Trre1g02960	241	Pfam	FAR1 DNA-binding domain	54	139	IPR004330	-
	Trre1g02960	241	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	23	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g02960	Trre-Chr1	25260546	25262752	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Trre1g02960		FAR1	2.2e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g02960	-		-	mtr:112418473	268.085