Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02947 ATGGAAAATTCATTGGTGAACCATGAAACTGAGCTGAATCTCAAGGCTACAGAATTAAGGTTGGGATTACCCGGCTGTGATGAGATAAAGAAACTTCCATGCAATTTCTCTCTTCTTAGAAGCAACAAGAGATCTTCATCAGAAATTAGTGACGTAGATTCCATGAGCAAGACCAAATTAAATGCTTCTAATGGTTCTGAAATCACAAGTGATGATCAAGACAATGCTCCACCTTCAAAGACACAAATAGTGGGATGGCCACCAATTAGATCTTATAGGAAGAATAATTTGCAACAAAAGAAAGGTGAATCAGAAATTGGGATGTACGTGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAAATAGATCTTAAATTTTACAAGAGTTACTCAGAACTTCTCAAGGTTTTAGAAAATATGTTCAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGTTACAATGGATCTGAATTTGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTATTGGAGATGTTCCTTGGGAAATGTTCAAGTCTTCTTGCAAAAGGTTGAGAATTATGAAAGGATCAGAAGCAAAAGGATTGGGTTGTTTTTGA 612 0.3611 MENSLVNHETELNLKATELRLGLPGCDEIKKLPCNFSLLRSNKRSSSEISDVDSMSKTKLNASNGSEITSDDQDNAPPSKTQIVGWPPIRSYRKNNLQQKKGESEIGMYVKVSMAGAPYLRKIDLKFYKSYSELLKVLENMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLIGDVPWEMFKSSCKRLRIMKGSEAKGLGCF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02947 203 SUPERFAMILY CAD & PB1 domains 104 193 - -
Trre1g02947 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 198 IPR003311 GO:0005634|GO:0006355
Trre1g02947 203 Pfam AUX/IAA family 40 201 IPR033389 -
Trre1g02947 203 FunFam Auxin-responsive protein 102 203 - -
Trre1g02947 203 ProSiteProfiles PB1 domain profile. 107 194 IPR000270 GO:0005515
Trre1g02947 203 MobiDBLite consensus disorder prediction 47 85 - -
Trre1g02947 203 Gene3D - 102 203 - -
Trre1g02947 203 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02947 Trre-Chr1 25091526 25092925 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02947 95 200 B3 DNA Binding Superfamily AT2G46530 33.962 6.01e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre1g02947 AUX_IAA 1.3e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02947 K14484 - gmx:100780752 301.982