Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02945 ATGGAAGTTGCAGCTGGGTTGAAAAAGGAGAAGATGGTGTTTGATGAAACTGAACTGAGGCTTGGATTGCCTGGAAATATTGGAGCTGGCAAAACAACAGAAGTAGTAAGGAAGAGATGTTTCTCTGAAACTGAGAGTGAAAGTGATGAAGCAACTACTGTTGATTTGAAGCTTAATCTCTCTTCCAAAGAAGGAGCAGCAGATTCACTTGAAAAGACTAAGGAGAAGACTCTTTTGCTCTCTGATTCCGGCACCAAGCCACCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTCCGGTCGTTCCGAAAGAACATGTTTGCAGCCCAAAAGAGCAACAAGGGATTAGAGGAAAGTGAGAAGACAAACACTAATCCAATAAGCTTTGTCAAAGTTAGCATGGATGGTGCACCTTACCTTCGCAAAGTAGATCTCAAGATGTACAAGAGTTACCCAGAACTCTCAGATGCCTTAGCCAAAATGTTCAACTCGGTTACCAACGGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAAGGAGAGTAATAAGCTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTGTTGGACTCGCGCCAAGAGCTATGGAAAAATGCAAGAACAGGAGCTAG 741 0.4399 MEVAAGLKKEKMVFDETELRLGLPGNIGAGKTTEVVRKRCFSETESESDEATTVDLKLNLSSKEGAADSLEKTKEKTLLLSDSGTKPPAKAQVVGWPPVRSFRKNMFAAQKSNKGLEESEKTNTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSVTNGNCESQGIKDFMKESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGKEAVGLAPRAMEKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02945 246 Gene3D - 105 239 - -
Trre1g02945 246 SUPERFAMILY CAD & PB1 domains 118 227 - -
Trre1g02945 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 232 IPR003311 GO:0005634|GO:0006355
Trre1g02945 246 Pfam AUX/IAA family 16 237 IPR033389 -
Trre1g02945 246 FunFam Auxin-responsive protein 122 238 - -
Trre1g02945 246 ProSiteProfiles PB1 domain profile. 127 228 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02945 Trre-Chr1 25045715 25048779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02945 109 236 B3 DNA Binding Superfamily AT4G23980 31.250 6.87e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre1g02945 AUX_IAA 3.5e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02945 K14484 - gmx:100780214 331.643