Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g02929 | ATGGACTCATCTATGCCCAAAGATGAAGAATCTCAGTTTCACCTACAGACTGCGGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTTGCAAACGTTTAGCTAAGATTGTGTACTTGAGGTTGTTTGACTGGCTAGTAGATAAAATTAATAATTCAATTGGTCAGGATCCTGACTCAAAGTCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACTTTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTTTGGATCTCATTGAAAAGATTGGTAAAACCAAAGTGTTTCTTAGAGCTGGTCAAATGGAAGAACTAGATACTTATAGAAGTGAGATCTTAGGAAAATACAACCTGCATGCAGAGGATAACTTGCTCGGGAAGTATACAAGGGATTGCGGCAGCAGGCTTCTAGTCTGA | 555 | 0.3748 | MDSSMPKDEESQFHLQTAAELFMCDAKALEDSLCKRLAKIVYLRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQLFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKIGKTKVFLRAGQMEELDTYRSEILGKYNLHAEDNLLGKYTRDCGSRLLV | 184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g02929 | 184 | PANTHER | MYOSIN | 4 | 135 | - | - | |
Trre1g02929 | 184 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 31 | 56 | - | - | |
Trre1g02929 | 184 | Gene3D | Kinesin motor domain | 57 | 77 | IPR036961 | - | |
Trre1g02929 | 184 | ProSiteProfiles | Myosin motor domain profile. | 1 | 184 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Trre1g02929 | 184 | Gene3D | - | 78 | 138 | - | - | |
Trre1g02929 | 184 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 165 | IPR027417 | - | |
Trre1g02929 | 184 | PRINTS | Myosin heavy chain signature | 119 | 147 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Trre1g02929 | 184 | PRINTS | Myosin heavy chain signature | 66 | 94 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Trre1g02929 | 184 | SMART | MYSc_2a | 1 | 157 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Trre1g02929 | 184 | Pfam | Myosin head (motor domain) | 34 | 135 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g02929 | Trre-Chr1 | 24893320 | 24895871 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g02929 | 135 | 176 | Myosins gene family | AT1G04600 | 52.381 | 2.01e-07 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g02929 | K10357 | - | gmx:100819463 | 251.906 |