Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02929 ATGGACTCATCTATGCCCAAAGATGAAGAATCTCAGTTTCACCTACAGACTGCGGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTTGCAAACGTTTAGCTAAGATTGTGTACTTGAGGTTGTTTGACTGGCTAGTAGATAAAATTAATAATTCAATTGGTCAGGATCCTGACTCAAAGTCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACTTTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTTTGGATCTCATTGAAAAGATTGGTAAAACCAAAGTGTTTCTTAGAGCTGGTCAAATGGAAGAACTAGATACTTATAGAAGTGAGATCTTAGGAAAATACAACCTGCATGCAGAGGATAACTTGCTCGGGAAGTATACAAGGGATTGCGGCAGCAGGCTTCTAGTCTGA 555 0.3748 MDSSMPKDEESQFHLQTAAELFMCDAKALEDSLCKRLAKIVYLRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQLFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKIGKTKVFLRAGQMEELDTYRSEILGKYNLHAEDNLLGKYTRDCGSRLLV 184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02929 184 PANTHER MYOSIN 4 135 - -
Trre1g02929 184 Gene3D Myosin VI head, motor domain, U50 subdomain 31 56 - -
Trre1g02929 184 Gene3D Kinesin motor domain 57 77 IPR036961 -
Trre1g02929 184 ProSiteProfiles Myosin motor domain profile. 1 184 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02929 184 Gene3D - 78 138 - -
Trre1g02929 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 165 IPR027417 -
Trre1g02929 184 PRINTS Myosin heavy chain signature 119 147 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02929 184 PRINTS Myosin heavy chain signature 66 94 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02929 184 SMART MYSc_2a 1 157 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02929 184 Pfam Myosin head (motor domain) 34 135 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g02929 Trre-Chr1 24893320 24895871 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02929 135 176 Myosins gene family AT1G04600 52.381 2.01e-07 48.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02929 K10357 - gmx:100819463 251.906