Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02928 ATGGCGGATGTTGAACCCGAGGTAGCAGCAGCAGGAGTACCAAAGAAGAGAACATTCAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTCTTGGATATGAAAACTGATGAGCTTGTCAAGCTTTTCTCTGCTCGTGCCCGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAACGTGACGCACCACCAGGTGAGAAGCCAGAGCCAGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAATGGAAAGACCTTCAATCAGGTTGAAATTAAACCTGAAATGATTGGTCACTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCTACTCACTCCTCTAGGTTTATTCCTCTCAAGTGA 459 0.4728 MADVEPEVAAAGVPKKRTFKKFSFRGVDLDALLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02928 152 Gene3D 30s Ribosomal Protein S19; Chain A 9 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Trre1g02928 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 FunFam 40S ribosomal protein S15 9 152 - -
Trre1g02928 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre1g02928 152 NCBIfam 30S ribosomal protein S19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02928 Trre-Chr1 24860521 24862006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02928 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.158 9.66e-95 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02928 1 24860521 24862006 Trre1g02928 1 24860521 24862006 ECH