Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02925 ATGGCTCCAAAATCTTCCACTGCTTCACATCCTACTTACGAAGAGATGATTAAGGAAGCGATTGTGACACTGAAGGAGAAAACAGGTTCAAGTCAAATTGCGATTGCGAAATTCATCGAAGAGAAACACAAAAATCTTTCTCCAAATTTCAAGAAGCTATTACTTCAAGCTTTGAAGAAAAACGTTGCTTCTGGAAAACTTGTTAAGGTTAAAGGTTCATTCAAACTTTCTCCGGCGACTAAAGCTTCTGAGCCGAAGACAAAGCAGGCGGTTGCGAAGCCTAAGACAAAGCCAGCTGCTAAAGTGACGGCGGTGAAGGCCAAGCCAGCCGCTAAGCCAAAGACGAAAGCTGTAACAAAAGTTGTTTCAAAGGCCAAGCCCAAAGCTGTTGCTTCTAAGCCCAAAGCTGTTGCTGCTAAGCCCAAAGCTGTTGCTGCTAAGCCTAAAGCTGTTGCTGCCAAGCCTAAAGCTGTTGCTGCCAAGCCCAAGGCTGCAAGGACTTCGACGAGGACAACGCCGGGAAAGAAAGTTGCTGCTTCGAAGACAGTCGTGAAGAAAGCGGTGGCTGCTAAGAAATCTCCGGTGAAGAGTAAAATTGTGAAGTCTCCGGCGAAGAAAGTTTCGACGAAGAGAGGTGGAAGAAAATGA 648 0.4599 MAPKSSTASHPTYEEMIKEAIVTLKEKTGSSQIAIAKFIEEKHKNLSPNFKKLLLQALKKNVASGKLVKVKGSFKLSPATKASEPKTKQAVAKPKTKPAAKVTAVKAKPAAKPKTKAVTKVVSKAKPKAVASKPKAVAAKPKAVAAKPKAVAAKPKAVAAKPKAARTSTRTTPGKKVAASKTVVKKAVAAKKSPVKSKIVKSPAKKVSTKRGGRK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02925 215 Pfam linker histone H1 and H5 family 10 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02925 215 Gene3D - 5 90 IPR036388 -
Trre1g02925 215 PRINTS Histone H5 signature 145 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02925 215 PRINTS Histone H5 signature 123 140 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02925 215 PRINTS Histone H5 signature 23 40 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02925 215 PANTHER HISTONE H1 4 198 - -
Trre1g02925 215 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 9 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02925 215 SMART h15plus2 7 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02925 215 SUPERFAMILY "Winged helix" DNA-binding domain 6 88 IPR036390 -
Trre1g02925 215 CDD H15 7 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02925 215 MobiDBLite consensus disorder prediction 75 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02925 Trre-Chr1 24809831 24810600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02925 1 89 Single Myb Histone (SMH) Gene Family AT1G72740 34.066 2.67e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02925 K11275 - zju:107425932 118.242