Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02924 ATGACCACAGAAGAGCCCATTGCTGTTGTTGTGGAACCTGTTCCCGAACCAACCATCACCGAACCACCAGCCTCGGAGAAAGAAGAACCAAAGGCCGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAATCTTCCAAACCACGAAACCCTGCTTCTCATCCTTCTTATGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAGGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAACTTCCTTCCAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTTCAAAGACGAAACCATCATCGGTGACTGCACCTTCTGAGGCGAAGAAGAAGCCTGCAGCGGCCAAGCCGAAGACAAAGCCAACTGCTGTGAAGGCTAAGCCAGCCTCTAAGCCAAAGGCTAAAGCTGTTGTTAAGCCAAAGGCTTCTTCGAAGCCCAAAACTGCTGCTGCGAAGCCCAAAACTGCTGCTGCGAAGCCCAAAGTTGGTGCTGCAAAGCCCAAGCCTGCTGTCAAGACCAAGACTGTTGTGAAACCGAAGGCCAATGAGAAATCTGCAAAGGTTGCAAGGACATCGACGAGGACTTCACCGGGGAAGAAAGTTGCTACTGTGAAGGCAGCACCTAAGAAAGTTGTGGCTGCGAAGAAAGCTCCGGTGAAGAGCGTGAAGCCTAAAAGCGTAAAGTCTCCGGCGAAGAAGGTTTCGGTGAAGAGAGGGGGAAGGAAATGA 813 0.4772 MTTEEPIAVVVEPVPEPTITEPPASEKEEPKAEAEKKTKESKPKKSSKPRNPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSKTKPSSVTAPSEAKKKPAAAKPKTKPTAVKAKPASKPKAKAVVKPKASSKPKTAAAKPKTAAAKPKVGAAKPKPAVKTKTVVKPKANEKSAKVARTSTRTSPGKKVATVKAAPKKVVAAKKAPVKSVKPKSVKSPAKKVSVKRGGRK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02924 270 Pfam linker histone H1 and H5 family 55 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02924 270 MobiDBLite consensus disorder prediction 254 270 - -
Trre1g02924 270 Gene3D - 50 129 IPR036388 -
Trre1g02924 270 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02924 270 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02924 270 PRINTS Histone H5 signature 170 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02924 270 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02924 270 MobiDBLite consensus disorder prediction 1 59 - -
Trre1g02924 270 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02924 270 CDD H15 52 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02924 270 PANTHER HISTONE H1 23 248 - -
Trre1g02924 270 MobiDBLite consensus disorder prediction 114 270 - -
Trre1g02924 270 SUPERFAMILY "Winged helix" DNA-binding domain 51 129 IPR036390 -
Trre1g02924 270 MobiDBLite consensus disorder prediction 22 47 - -
Trre1g02924 270 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02924 Trre-Chr1 24804636 24805549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02924 56 121 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 2.85e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02924 K11275 - zju:107425932 141.354