Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02923 ATGGCAACAGAAGAACCCATTGTTGTTGTGGAACCTGTTCCCGAACCAACCATCACCGAACCACCAGCCTCGGAGAAAGAAGAACCAAAGGCCGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAATCTTCCAAACCACGAAGCCCTGCTTCTCATCCTTCTTATGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAGGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTTCGAAGACGAAACCATCATCAGTGACTGCACCTTCTGAGGCGAAGAAGAAGCCTGCAGCGGCCAAGCCGAAGACAAAGCCAACTGCTGTGAAGGCTAAGCCAGCCTCTAAGCCAAAGGCTAAAGCTGTTGTTAAGCCAAAGGCTTCTTCGAAGCCCAAAACTGCTGCTGCGAAGCCCAAAGTTGGTGCTGCAAAGCCCAAGCCTGCTGTCAAGACCAAGACTGTTGTGAAACCGAAGGCCAATGAGAAATCTGCAAAGGTTGCAAGGACATCGACGAGGACTTCACCGGGGAAGAAAGTTGCTACTGTGAAGGCAGCACCTAAGAAAGTTGTGGCTGCGAAGAAAGCTCCGGTGAAGAGCGTGAAGCCTAAAAGCGTAAAGTCTCCGGCGAAGAAGGTTTCAACGAAGAGAGGAGGGAGGAAATGA 789 0.4715 MATEEPIVVVEPVPEPTITEPPASEKEEPKAEAEKKTKESKPKKSSKPRSPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSKTKPSSVTAPSEAKKKPAAAKPKTKPTAVKAKPASKPKAKAVVKPKASSKPKTAAAKPKVGAAKPKPAVKTKTVVKPKANEKSAKVARTSTRTSPGKKVATVKAAPKKVVAAKKAPVKSVKPKSVKSPAKKVSTKRGGRK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02923 262 MobiDBLite consensus disorder prediction 110 262 - -
Trre1g02923 262 MobiDBLite consensus disorder prediction 1 58 - -
Trre1g02923 262 MobiDBLite consensus disorder prediction 246 262 - -
Trre1g02923 262 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02923 262 MobiDBLite consensus disorder prediction 21 46 - -
Trre1g02923 262 SUPERFAMILY "Winged helix" DNA-binding domain 48 127 IPR036390 -
Trre1g02923 262 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02923 262 PRINTS Histone H5 signature 182 199 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02923 262 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02923 262 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g02923 262 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02923 262 CDD H15 52 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02923 262 PANTHER HISTONE H1 23 240 - -
Trre1g02923 262 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g02923 262 Gene3D - 49 128 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02923 Trre-Chr1 24791285 24792174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02923 55 120 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 2.70e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02923 K11275 - cit:102626409 136.346