Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02889 ATGGTACAGGGCATGCCCGAAAATATAATTGTCGGTTCTCACGTTTGGGTTGGAGATCCAGATTTAGTTTGGATTGATGGAGTAGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAACTAGCAATGAAAAGAAGGTAGTCTCCCGTTTGTCAAAATTACATCCCAAGGATACAGATGCTCCTACAGATGGAGTTGATGATATGACAAAACTCGCTTATTTGCATGAGCCAGGAGTGCTATATAATTTGGAAACTCGATACAAGATCAATGAAATATATACTTATACAGGAAATATTCTTATTGCGATCAATCCCTTTCAAAATCTTCCACACCTGTATGATGCTAGTGCAATGAAAAGATACAAGGGAGAAAAAATGGGAAATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCTATGATTACTGAGGCGAAGAGCAACTCTATTCTGGTTAGTGGTGAAAGTGGTGCCGGAAAGACAGAAACCACCAAAATGCTTATGCTTTACTTAGCATATTTGGGTGGTCACACTGCATCTGAAGGACGGACTGTTGAACAACAAGTTCTAGAATCAAACCCAGTTCTTGAAGCATTTGGTAATGCAAAAACAGTTAGAAATGACAATTCTAGCCGTTTTGGAAAATTTGTTGAGATACAATTTGATAAATACGGGCGAATATCTGGCGCAGCTATTAGAACTTATCTGCTCGAGAAATCTCGTGTTTGCCAAATATCAGACCCGGAGCGTAATTATCACTGTTTCTACCTTCTCTGTGCTTCTCCTCCAGAGGAAAAAGAAAAATATAAGTTGGGAGATCCAAGATCATTTCATTACCTTAATCAATCCACTTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAAAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGAGTTGTTGCTGCTATTCTCCATCTTGGAAACATTAGATTTGAAAAGTCAGAAGAAACAGATTCATCAGTTCTAGCAGACGAAGACTCAAAGTTCCATCTCCAAACAACAGCCGAACTTCTAATGTGTGAACCTAATGCTGTGGAAGTTGCACTTTGTAAGCGTGTGATGATCACCCCAGAAGAAATCATTGAAAGAAGTCTTGATCCTCTTGCCGCAACAGTTAGCAGGGATGGTTTGGCAAAGACATTATATTCTCGTTTGTTTGACTGGTTAGTCCAGAAAATTAATCTCTCCATTGGGCAGGATCCTGACTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTTACGAACGAAAAGCTGCAACAGCACTTCAACCAGCACGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGATTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTAGATCTCATTGAAAAGAAACCAGGTGGAATAGTTGCTCTGCTTGATGAGGCTTGTATGTTTCCCAAGTCAACTCATGAAACTTTTTCAACAAAACTTTATCAAACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTATTGTTCATTATGCAGGGGAAGTCCAGTATCAATCTGAGCACTTCATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTGAGTAATTCCAAATGTTCATTTGTATCGGGCCTTTTTCCTCCACTTTCGGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACATTTGATGGACGCGCTCAATCTGACAGAGCCCCACTATATTAGATGTGTGAAGCCGAATAGTCTATTAAAACCTGGGATATTTGAGAATATGAATGTCATGCATCAATTACGCTCTGGTGGTGTTCTTGAAGCCGTGAGAATAAAATGTGCTGGATTCCCCACTCACAGAACCTTTCAAGAATTTTTAACTCGAGTAGGCATTCTTGCTCCCGAGATCCTTCATGGGAACTTCGAAGAAATGGAATCATGTAAAAAGATTTTAGAGAAGATTGGGCTGACGGGTTATCAGATAGGGAAAACAAAAATATTCCTAAGAGCTGGTCATATGGCAGAATTGGATGCTCGGAGAGCATACATGCTTAGCAATTCTGCGACAATTATCCAAAAGCAAACTAAAACTTATTTTACTCGGAAAACTTATATTGCACTGCGAAATTCCTCTATCTTTGTGCAATCTATTTGCAGAGGAGAACTGGCACGGATACAATATTATCACATGAAGAGAAAAGCAGCTGCCATCAAAATTCAAACCTATACACGTGGAAGATTAACCAGAAAAAACTACTACAAAATAAGGATGTCTGCCCTTGTCTTAGAGACAGGTTTTCGGGCTATGGCTGCTCGACGTGCTCGTGATATATGGAAACGTAGAAAGCAAACTAAGGCATCAACTAGTATTCAGTCCTATTGGCGGCGACATAAAGCTCTCTTTAACTATCAGAACCTTAAGAAAGCATCACTCATTTCACAAAGTGTCAATCGCTCCAGCGATGAACATGAACAGAAGGTTGTGGAGTTATCAGTGGAAAATGAATGTCCTTCTGTGGAAGAATCTTCAAATTTATTACCTGAAGAATCCCCAAGTTCTTTCAAAGATAATGAAAGTATTGAAACTATTAGGGTTTTCCCTAATCCTCTCAGAGATACTGAAAACAATGAAGCTATTGGGGATTTCTCTAGTCCCCTCAAAGACTCTGAAAGCAATGAAGCTATTAGGGATTTCTCTAGTCCCCTCAAAGACAATGAAAAGATTGAAGCTCTTTCTGCAGAAATAAAAAATTTAAAGGTCATGTTGCAGGAAGAAAAACATAAAACTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGCATCTAGCGAAGAATTACGCAAAAAGTTAGCCGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGACGTTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCAGCATCTGTAACAAATCCAGAAGCATTATCTTCTGCCGAGCCAAAACTTGTAGTTCAGGATATCACTGCAGCTGAAGGATCAGGATCTGAAAGTGAAAAAGAAGGTTCGTTTGATGATGTCTTCTAG 3336 0.3888 MVQGMPENIIVGSHVWVGDPDLVWIDGVVLNINGEEAEIQTSNEKKVVSRLSKLHPKDTDAPTDGVDDMTKLAYLHEPGVLYNLETRYKINEIYTYTGNILIAINPFQNLPHLYDASAMKRYKGEKMGNLSPHVFAIAEAAYRAMITEAKSNSILVSGESGAGKTETTKMLMLYLAYLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSTCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIRFEKSEETDSSVLADEDSKFHLQTTAELLMCEPNAVEVALCKRVMITPEEIIERSLDPLAATVSRDGLAKTLYSRLFDWLVQKINLSIGQDPDSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFSTKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEHFIDKNKDYVVPEHQDMLSNSKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQHLMDALNLTEPHYIRCVKPNSLLKPGIFENMNVMHQLRSGGVLEAVRIKCAGFPTHRTFQEFLTRVGILAPEILHGNFEEMESCKKILEKIGLTGYQIGKTKIFLRAGHMAELDARRAYMLSNSATIIQKQTKTYFTRKTYIALRNSSIFVQSICRGELARIQYYHMKRKAAAIKIQTYTRGRLTRKNYYKIRMSALVLETGFRAMAARRARDIWKRRKQTKASTSIQSYWRRHKALFNYQNLKKASLISQSVNRSSDEHEQKVVELSVENECPSVEESSNLLPEESPSSFKDNESIETIRVFPNPLRDTENNEAIGDFSSPLKDSESNEAIRDFSSPLKDNEKIEALSAEIKNLKVMLQEEKHKTDEYERKYVEAQASSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPASVTNPEALSSAEPKLVVQDITAAEGSGSESEKEGSFDDVF 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02889 1111 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 CDD MYSc_Myo11 78 722 IPR036018 -
Trre1g02889 1111 ProSiteProfiles IQ motif profile. 836 863 IPR000048 GO:0005515
Trre1g02889 1111 MobiDBLite consensus disorder prediction 1054 1079 - -
Trre1g02889 1111 Pfam IQ calmodulin-binding motif 837 852 IPR000048 GO:0005515
Trre1g02889 1111 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Trre1g02889 1111 Gene3D - 930 1052 - -
Trre1g02889 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 787 IPR027417 -
Trre1g02889 1111 FunFam Class V myosin 441 586 - -
Trre1g02889 1111 Gene3D Kinesin motor domain 67 664 IPR036961 -
Trre1g02889 1111 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 Coils Coil 961 1016 - -
Trre1g02889 1111 Gene3D - 441 625 - -
Trre1g02889 1111 PANTHER MYOSIN 56 1040 - -
Trre1g02889 1111 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Trre1g02889 1111 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Trre1g02889 1111 Gene3D - 736 786 - -
Trre1g02889 1111 Gene3D - 787 839 - -
Trre1g02889 1111 SMART iq_5 784 806 IPR000048 GO:0005515
Trre1g02889 1111 SMART iq_5 835 857 IPR000048 GO:0005515
Trre1g02889 1111 SMART iq_5 736 758 IPR000048 GO:0005515
Trre1g02889 1111 SMART iq_5 759 781 IPR000048 GO:0005515
Trre1g02889 1111 FunFam Myosin 2 314 426 - -
Trre1g02889 1111 MobiDBLite consensus disorder prediction 1054 1111 - -
Trre1g02889 1111 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 FunFam Myosin heavy chain 254 309 - -
Trre1g02889 1111 Gene3D - 668 735 - -
Trre1g02889 1111 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 Gene3D - 254 312 - -
Trre1g02889 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 871 IPR027417 -
Trre1g02889 1111 MobiDBLite consensus disorder prediction 924 946 - -
Trre1g02889 1111 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g02889 1111 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02889 Trre-Chr1 24241213 24257466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02889 4 1020 Myosins gene family AT1G54560 63.410 0.0 1387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02889 K10357 - gmx:100803485 1764.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02889 1 24241213 24257466 Trre1g02889 1 24241213 24257466 ECH