Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02888 ATGGAAGGAAACTATCTGAATAGAAACACAACAACTACTCATAGAGATCATGATCATCATCTTCATCATCATCATCATCATCATCATCATAACTTGGGATTTGAAGAGCATACATGGGGAACATCATGGCCAGCAAGAAACTATACTTGTAGTTTTTGCAAAAGAGAGTTTAGGTCAGCTCAAGCTTTAGGTGGACATATGAATGTTCATAGAAGAGATAGGGCAAGATTAAGATCATCATTAATATCTTCTTTGGTTAATTCTGATCAATGCCCTAATAATAATATTAATAAACCTAACCCTACCATTACTACACAATCTCCTTTATCTAATGATGAGATTTTCAATTGTTCACATCCTTATCTCACTTTATCTTCTTCTTCTTCTTCTTCACATTCCTTAGCTAATACTAGCCATGATGATAAGAAACCAAGACTCACACCTTCTTTATCTCTTCCCCTTTTGAATCCACAAAGAAGTAAAATTATGAAGAGTTATGAAGATGTGAAGAAACATAATGTTTTGATGAATAGTGAGCAAAACATTACATTGGAGTTAGGAATAGGGTTACTTGAACACCAAGAGGAAAAGTTAGATTTGGAGCTTCGACTCTAG 615 0.3415 MEGNYLNRNTTTTHRDHDHHLHHHHHHHHHNLGFEEHTWGTSWPARNYTCSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSLVNSDQCPNNNINKPNPTITTQSPLSNDEIFNCSHPYLTLSSSSSSSHSLANTSHDDKKPRLTPSLSLPLLNPQRSKIMKSYEDVKKHNVLMNSEQNITLELGIGLLEHQEEKLDLELRL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02888 204 Gene3D Classic Zinc Finger 34 100 - -
Trre1g02888 204 MobiDBLite consensus disorder prediction 86 109 - -
Trre1g02888 204 Pfam C2H2-type zinc finger 48 72 - -
Trre1g02888 204 SMART c2h2final6 48 70 IPR013087 -
Trre1g02888 204 PANTHER OS07G0101800 PROTEIN 28 204 - -
Trre1g02888 204 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g02888 204 MobiDBLite consensus disorder prediction 126 154 - -
Trre1g02888 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Trre1g02888 204 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Trre1g02888 204 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02888 Trre-Chr1 24207276 24207890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02888 8 204 C2H2 Transcription Factor Family AT3G23130 36.816 5.71e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02888 - - tpra:123890230 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02888 1 24207276 24207890 Trre1g02888 1 24207276 24207890 ECH